View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15647_low_2 (Length: 713)
Name: NF15647_low_2
Description: NF15647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15647_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 315 - 695
Target Start/End: Complemental strand, 40831871 - 40831497
Alignment:
| Q |
315 |
caattcagtactaattttataaataatcagaatcagataaaattttacaannnnnnnnacgaaactaagcgaaattatattaaagaaaaacaacggagtt |
414 |
Q |
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| T |
40831871 |
caattcagtactaattttataaataatcagaatcagataaaattttacaatttttttaa-gaaactaagcgaaattatattaatgaaaaacaacggagtt |
40831773 |
T |
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| Q |
415 |
cctcaagcacaagacgtgccagaagaaactgaaaagttaaaattagacaacggttaagctacaaacaagccggtaatnnnnnnnnnnnnnnntgctaact |
514 |
Q |
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| T |
40831772 |
cctcaagcacaagacgtgccagaagaaactgagaagttaaaatttgacaacggttaagcaacaaacaagccggtaataaaaaaagaaaa---tgctaact |
40831676 |
T |
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| Q |
515 |
tatgcccataaaataacttaaaggttgtaacctaacttttattatttctaccgataacaacatatgtatttcaccttagagctgggtattactatatgat |
614 |
Q |
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| T |
40831675 |
tatgcccttaag-taacttaaaa-ttgtaacctaacttttattatttccaccgataacaacatatgtatttcaccttagagctgggtattactatatgat |
40831578 |
T |
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| Q |
615 |
aatattaagaacacaattgtatatgcagaaaacacgtttcttatgtctaaaccctgttctcgatttgtttcccacttaatc |
695 |
Q |
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| T |
40831577 |
aatattaagaacacaattgtatatgcagaaaacacgtttcttatgtctaaaccctgttctcgatttgtttcccacttaatc |
40831497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 218 - 482
Target Start/End: Complemental strand, 40832135 - 40831869
Alignment:
| Q |
218 |
ttttaaaaattaagcataacaaatatttggtgtaatacttttttctgtcaatattaccttgatttaaacttccttttaccattttatcattttatatcaa |
317 |
Q |
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| T |
40832135 |
ttttaaaaattaagcataacaaatatttggtgtaatacttttttctgtcaatattaccttgatttaaacttccttttaccattttatcattttatatcaa |
40832036 |
T |
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| Q |
318 |
ttcagtactaattttataaataatcagaatcagataaaattttacaa-nnnnnnnnacgaaactaagcgaaattatattaaagaaaaacaacggagttcc |
416 |
Q |
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| T |
40832035 |
ttcagtactaattttataaataatcagaatcagataaaattttacaatttttttttaagaaactaagcgaaattatattaaagaaaaacaacagagttcc |
40831936 |
T |
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| Q |
417 |
tcaagcacaagacgtgccagaag-aaactgaaaagttaaaattagacaacggttaagctacaaacaa |
482 |
Q |
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| T |
40831935 |
tcaagctcaagacatggtagaagaaaactgaaaagttaaaattagacaacggttaagccacaaacaa |
40831869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 40832725 - 40832544
Alignment:
| Q |
1 |
agtcaaatcattcttagaatctaattcagaaccagcatctctaaatcttacaaaatttcaagcacatttgcaatagccaacaattcaggatgcaaattta |
100 |
Q |
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| T |
40832725 |
agtcaaatcattcttagaatctaattcagaaccagcatctctaaatcttacaaaatttcaagcacatttgcaatagccaacaattcaggatgcaaattta |
40832626 |
T |
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| Q |
101 |
gttgaggatatcacataaatctgaccccatatgtcatccattcgtcattggcattactaagttctccaaatcctgatttacc |
182 |
Q |
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| T |
40832625 |
gttgaggatatcacataaatctgaccccatatgtcttccattcgtcattggcattactaagttctccaaatcctgatttacc |
40832544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 40832513 - 40832471
Alignment:
| Q |
185 |
gattcctaaataagctcccatatacatatattattttaaaaat |
227 |
Q |
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| T |
40832513 |
gattcctaaataaggtcccatatacatatattattttaaaaat |
40832471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 375 - 483
Target Start/End: Original strand, 1760541 - 1760649
Alignment:
| Q |
375 |
gaaactaagcgaaattatattaaagaaaaacaacggagttcctcaagcacaagacgtgccagaagaaactgaaaagttaaaattagacaacggttaagct |
474 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| | |||||| ||||| |||| |||| ||| |
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| T |
1760541 |
gaaactaatcgaaattatattaaagaaaaacaacagagttcctcaagcacaagacgtgcctgaaaaaactaagaagttataattacacaatagttaggct |
1760640 |
T |
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| Q |
475 |
acaaacaag |
483 |
Q |
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| T |
1760641 |
acaaacaag |
1760649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 411 - 485
Target Start/End: Complemental strand, 16863081 - 16863007
Alignment:
| Q |
411 |
agttcctcaagcacaagacgtgccagaagaaactgaaaagttaaaattagacaacggttaagctacaaacaagcc |
485 |
Q |
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| T |
16863081 |
agttcctcaagcacaagacgtgtcgggagaaactgaaaagtgaatattacacaacagttcggctacaaactagcc |
16863007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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