View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15647_low_7 (Length: 388)

Name: NF15647_low_7
Description: NF15647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15647_low_7
NF15647_low_7
[»] chr5 (5 HSPs)
chr5 (1-379)||(36851811-36852190)
chr5 (125-376)||(36863223-36863475)
chr5 (123-206)||(6165632-6165716)
chr5 (125-207)||(36862938-36863020)
chr5 (134-210)||(36863064-36863138)
[»] chr6 (7 HSPs)
chr6 (125-380)||(14642307-14642560)
chr6 (125-274)||(14643117-14643266)
chr6 (133-228)||(14642104-14642198)
chr6 (197-287)||(6676596-6676686)
chr6 (131-209)||(6676845-6676923)
chr6 (125-186)||(6676226-6676287)
chr6 (125-165)||(6677195-6677235)
[»] chr3 (1 HSPs)
chr3 (128-189)||(46516331-46516391)
[»] chr4 (1 HSPs)
chr4 (128-209)||(27755411-27755491)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 36852190 - 36851811
Alignment:
Q  1 attttgcgtcaatgtcagagcgttaagttagcacccacgttact-tgtatgttnnnnnnnnnnnnnnnnntactttatttatttattgttgaaccttaat 99  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||                  |||||||||||||||||||||||||||||    
T  36852190 attttgcgtcaacgtcagagcgttaagttagcacccacgttactctgtatgtttctctttctctctctctaactttatttatttattgttgaaccttaat 36852091  T
Q  100 aaacaatttgcgtcaacgtcagatctttttcccaattcttaaaccctagccctaattttattgattcgaaattgggggttttcttttaaattaattgatt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||||    
T  36852090 aaacaatttgcgtcaacgtcagatctttttcccaattcttaaaccctaaccctaattttattgattcgaaattgggggttttattttaaactaagtgatt 36851991  T
Q  200 attcaattcactttaaatgatgataacaatttcaatcttgctcttaatttctgtttttattcatagattcaattcctaatatgaaccttaataaacaagt 299  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36851990 attcaattcactttaaatgatgataacaatttcaatattgctcttaatttctgtttttattcatagattcaattcctaatatgaaccttaataaacaagt 36851891  T
Q  300 tttagtttttcctctgaattaatgaatccgagtgtttctatgttgataataataatcggtttcataatgatgatgatgat 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36851890 tttagtttttcctctgaattaatgaatccgagtgtttctatgttgataataataatcggtttcataatgatgatgatgat 36851811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 125 - 376
Target Start/End: Complemental strand, 36863475 - 36863223
Alignment:
Q  125 tttttcccaattcttaaaccctagccctaattttattgattcgaaattgggggtttt-cttttaaattaattgattattcaattcactttaaatgatgat 223  Q
    |||||||||||||||||| |||| ||||||| ||||||||||||||||| ||||||| ||||||||| || ||||| | |||||  |||||||||||||     
T  36863475 tttttcccaattcttaaatcctaaccctaatcttattgattcgaaattgagggtttttcttttaaatcaagtgattttccaattagctttaaatgatgaa 36863376  T
Q  224 aacaatttcaatcttgctcttaatttctgtttttattcatagattcaattcctaatatgaaccttaataaacaagttttagtttttcctc--tgaattaa 321  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| ||||  ||||||||||||||||  |||||||||  ||||||||    
T  36863375 aacaatttcaatcttgcacttaatttctgattttattcatagattcaattcataatctgaaagttaataaacaagtttt--tttttcctctttgaattaa 36863278  T
Q  322 tgaatccgagtgtttctatgttgataataataatcggtttcataatgatgatgat 376  Q
    | ||| |||||||||  || |||||||||||||| ||||| ||||| ||||||||    
T  36863277 tcaattcgagtgttttaattttgataataataatgggtttaataattatgatgat 36863223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 6165716 - 6165632
Alignment:
Q  123 tctttttcccaattcttaaaccctagccctaattttatt-gattcgaaattgggggttttcttttaaattaattgattattcaat 206  Q
    |||||||||||||||||||||||||  ||||||||||||  |||| || ||||||||||| |||| ||| || ||||||||||||    
T  6165716 tctttttcccaattcttaaaccctaaacctaattttattcaattcaaatttgggggttttgtttttaatcaaatgattattcaat 6165632  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 36863020 - 36862938
Alignment:
Q  125 tttttcccaattcttaaaccctagccctaattttattgattcgaaattgggggttttcttttaaattaattgattattcaatt 207  Q
    ||||| |||||||||||| |||| ||||||||||||||||| ||| || ||| |||| |||||||  || |||||||||||||    
T  36863020 ttttttccaattcttaaagcctaaccctaattttattgatttgaatttagggattttgttttaaaagaagtgattattcaatt 36862938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 36863138 - 36863064
Alignment:
Q  134 attcttaaaccctagccctaattttattgattcgaaattgggggttttcttttaaattaattgattattcaattcac 210  Q
    |||||||||| ||| |||| |||||||||||| |||  ||| |||||| |||||||| || |||| |||||||||||    
T  36863138 attcttaaactctaaccctgattttattgatttgaa--tggtggttttgttttaaatgaactgataattcaattcac 36863064  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 125 - 380
Target Start/End: Complemental strand, 14642560 - 14642307
Alignment:
Q  125 tttttcccaattcttaaaccctagccctaattttattgattcgaaattgggggttttcttttaaattaattgattattcaattcactttaaatgatgata 224  Q
    |||||| ||||||||||||||||  |||||||| ||||||| | | ||| ||||||||| |||||| || | ||||||||||||||||||||||||||||    
T  14642560 tttttcacaattcttaaaccctaaacctaatttgattgatttggatttgtgggttttctattaaatcaacttattattcaattcactttaaatgatgata 14642461  T
Q  225 acaatttcaatcttgctcttaatttctgtttttattcatagattcaattcctaatatgaaccttaataaacaagttttagtttttcctctgaattaatga 324  Q
    |||  |||||||||||||||||||  |||||| ||||||| ||| ||||| ||| ||| | || ||||||   |||||  | ||  || ||||| |||||    
T  14642460 acatattcaatcttgctcttaattcatgttttcattcatatatttaattcgtaacatggatctaaataaatgggtttt--tattctctttgaataaatga 14642363  T
Q  325 atccgagtgtttctatgttgataataataatcggtttcataatgatgatgatgatg 380  Q
    |   ||||||||  |||| |||||||||||  ||||| ||||| ||||||||||||    
T  14642362 aattgagtgttttaatgtggataataataacgggtttaataataatgatgatgatg 14642307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 274
Target Start/End: Original strand, 14643117 - 14643266
Alignment:
Q  125 tttttcccaattcttaaaccctagccctaattttattgattcgaaattgggggttttcttttaaattaattgattattcaattcactttaaatgatgata 224  Q
    |||||| | |||||||||| ||| ||||||||||||||||| | | ||| ||||||||| |||||| || | ||||||||||||| ||| ||||||||||    
T  14643117 tttttcacgattcttaaactctaaccctaattttattgatttggatttgtgggttttctattaaatcaagttattattcaattcatttttaatgatgata 14643216  T
Q  225 acaatttcaatcttgctcttaatttctgtttttattcatagattcaattc 274  Q
    |  | ||||||||||||||||| |  |||||| ||||||| ||| |||||    
T  14643217 aatacttcaatcttgctcttaagtcatgttttcattcatatatttaattc 14643266  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 14642198 - 14642104
Alignment:
Q  133 aattcttaaaccctagccctaattttattgattcgaaattgggggttttcttttaaattaattgattattcaattcactttaaatgatgataacaa 228  Q
    |||||||||||||||  |||||||||||||||| ||| |||||| |||| ||| |||| || |||||||| ||||||| |||||||||||||||||    
T  14642198 aattcttaaaccctaaacctaattttattgatttgaatttggggatttt-tttaaaatgaagtgattattgaattcaccttaaatgatgataacaa 14642104  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 287
Target Start/End: Original strand, 6676596 - 6676686
Alignment:
Q  197 attattcaattcactttaaatgatgataacaatttcaatcttgctcttaatttctgtttttattcatagattcaattcctaatatgaacct 287  Q
    |||| ||||||||||||||||||||||| ||| ||||||||||||| ||||| ||| ||| ||||||| ||| ||||| ||| ||| ||||    
T  6676596 attaatcaattcactttaaatgatgatagcaacttcaatcttgctcataattcctgatttcattcatatatttaattcgtaacatggacct 6676686  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 6676845 - 6676923
Alignment:
Q  131 ccaattcttaaaccctagccctaattttattgattcgaaattgggggttttcttttaaattaattgattattcaattca 209  Q
    ||||||||||||||||  || |||||||||||||| ||| ||||||  |||  ||||||| || |||||||||||||||    
T  6676845 ccaattcttaaaccctgaccataattttattgatttgaatttggggaatttgatttaaatgaagtgattattcaattca 6676923  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 6676226 - 6676287
Alignment:
Q  125 tttttcccaattcttaaaccctagccctaattttattgattcgaaattgggggttttctttt 186  Q
    |||||| ||||||||||||| ||| |||||||||||| ||||||| ||| ||||||| ||||    
T  6676226 tttttcacaattcttaaaccttagacctaattttattcattcgaatttgtgggttttgtttt 6676287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 6677195 - 6677235
Alignment:
Q  125 tttttcccaattcttaaaccctagccctaattttattgatt 165  Q
    ||||| |||||||||||||||||  ||||||||||||||||    
T  6677195 ttttttccaattcttaaaccctaaacctaattttattgatt 6677235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 46516331 - 46516391
Alignment:
Q  128 ttcccaattcttaaaccctagccctaattttattgattcgaaattgggggttttcttttaaa 189  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||||| |||| |||||||    
T  46516331 ttcccaattcttaaaccctaaccctaattttatcgattcg-aattggggcttttgttttaaa 46516391  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 27755491 - 27755411
Alignment:
Q  128 ttcccaattcttaaaccctagccctaattttattgattcgaaattgggggttttcttttaaattaattgattattcaattca 209  Q
    |||||||||||||||||||| ||||||||| ||| ||| | ||||| ||||||| ||||||   || |||||| ||||||||    
T  27755491 ttcccaattcttaaaccctaaccctaatttaattcatt-ggaattgagggttttgttttaacccaagtgattaatcaattca 27755411  T

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