View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15647_low_8 (Length: 375)
Name: NF15647_low_8
Description: NF15647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15647_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 44623302 - 44622964
Alignment:
| Q |
19 |
aacatataaatatacacattttttaagtctaagattgtgaggcattgatttttcttgacaaaggcatggaaatctatataacaaaagcatgaaaaataat |
118 |
Q |
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| T |
44623302 |
aacatataaatatacacattttttaagtctaagattgcgaggcattgatttttcttgacaaaggcatggaaatctatataacaaaagcatgaaaaataat |
44623203 |
T |
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| Q |
119 |
aacaagaagtagggttttaataatttgttccaattgagatacttgcaatacaagcaaagaaggtataagatcctacaaacatcctatacttcccaacaat |
218 |
Q |
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| T |
44623202 |
aacaagaagtagggttttaataatttgttccaattgagatacttgcaatacaagcaaagaaggtataagatcctacaaacatcctatacttcccaac--- |
44623106 |
T |
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| Q |
219 |
taaagattcctttcgacaactaagaaaacacagtgatccttaaattcgattgtgcactattgtttaattatagatgctattacatattgaaacaagaaaa |
318 |
Q |
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| T |
44623105 |
-aaagattcctttcgacaactaagaaaacacagtgatccttaaatttgattgtgcactattgtttaattatagatgctattacatattgaaacaagaaaa |
44623007 |
T |
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| Q |
319 |
tttgcatatagataatagagtaaagctgtgagtaattagtaac |
361 |
Q |
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| T |
44623006 |
tttgcatatagataatagagtaaagctgtgagtaattagtaac |
44622964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 44623399 - 44623360
Alignment:
| Q |
8 |
tgagaagaaaaaacatataaatatacacattttttaagtc |
47 |
Q |
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| T |
44623399 |
tgagaagaaaaaacatataaatatacacagtttttaagtc |
44623360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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