View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15648_high_1 (Length: 456)
Name: NF15648_high_1
Description: NF15648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15648_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 438
Target Start/End: Complemental strand, 657757 - 657330
Alignment:
| Q |
12 |
cgaagaatatcacaacggttcaagataatcaaaatgaaatgtgtttttcgatctatgaaggagatgaacaaagtgttaacagaaacactaaactaggaga |
111 |
Q |
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| T |
657757 |
cgaagaatatcacaacggttcaagataatcaaaatgaaatgtgtttgttgatctatgaaggagatgaacaaagtgttaacagaaacactaaactaggaga |
657658 |
T |
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| Q |
112 |
attagaactc-ttggcattcctcctgctaaatgtggtgttcccactatcactcttcgcttcgatataagttcagatggtgccttaactatttctgcgaca |
210 |
Q |
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| T |
657657 |
attagaactccttggcattcctcctgctaaatgtggtgttcccactatcactcttggcttcgatataagttcagatggtgccttaactatttctgcaaca |
657558 |
T |
|
| Q |
211 |
gagagctcttctggaacaagcaacaaaattaccattgaaaatttcaagggaagattttctgaagaggagatcgagaagatgattaaccaagcttctaagt |
310 |
Q |
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| T |
657557 |
gagagctcttctggaacaagcaacaaaattaccattgaaaatttcaagggaagattttctgaagaggagatcgagaagatgattaaccaagctgctaagt |
657458 |
T |
|
| Q |
311 |
acaaatctgatgatgagaaacaccagaagaataaggaggcagcaaatgagcttattgaatatgccactgtcatgaagcaaacaattaatcctgagctgtc |
410 |
Q |
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| T |
657457 |
acaaatctgatgatgagaaacaccagaagaataaggaggcagcaaatgagcttattgaatatgccactgccatgaagcaaacaattaatcctgagctgtc |
657358 |
T |
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| Q |
411 |
agttaatgcaaaggaagaaattgaaagt |
438 |
Q |
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| T |
657357 |
agttaatgcaaaggaagaaattgaaagt |
657330 |
T |
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