View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15648_high_7 (Length: 273)
Name: NF15648_high_7
Description: NF15648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15648_high_7 |
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| [»] scaffold0902 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1176 (1 HSPs) |
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Alignment Details
Target: scaffold0902 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 3773 - 3899
Alignment:
| Q |
19 |
cggaactcagaaacagtgcaaccaaaagcatcaacacagcggtgtgatatgagaagaagccatagttgaaagatgaaggagaatgggaaaattagggtta |
118 |
Q |
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| T |
3773 |
cggaactcagcaacagtgcaaccaaaagcatcaacacagcggttt----tg-gaagaagccatagtagaaagatgaaggagaataggaaaattagggtta |
3867 |
T |
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| Q |
119 |
ac--tagaaagttttgaagcagtgatattgtt |
148 |
Q |
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| T |
3868 |
actatataaagttttgtagcagtgatattgtt |
3899 |
T |
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Target: scaffold0902; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 17 - 83
Alignment:
| Q |
90 |
gatgaaggagaatgggaaaattagggttaac--tagaaagttttgaagcagtgatattgttgtgttg |
154 |
Q |
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| T |
17 |
gatgatggagaatgggaatattagggttaacaatataaagttttgaagcaatgatattattgtgttg |
83 |
T |
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Target: scaffold0002 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 165060 - 164951
Alignment:
| Q |
19 |
cggaactcagaaacagtgcaaccaaaagcatcaacacagcggtgtgatatgagaagaagccatagttgaaagatgaaggagaatgggaaaattagggtta |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| | |||| |||||||||||||| |||||||||| ||||||||||| |||||||||| |
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| T |
165060 |
cggaactcagaaacagtgcaacgaaaagcatcaacacagccgagtga-----gaagaagccatagtagaaagatgaacgagaatgggaatattagggtta |
164966 |
T |
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| Q |
119 |
actagaaagttttga |
133 |
Q |
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| T |
164965 |
actagaaagttttga |
164951 |
T |
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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 14248666 - 14248775
Alignment:
| Q |
19 |
cggaactcagaaacagtgcaaccaaaagcatcaacacagcggtgtgatatgagaagaagccatagttgaaagatgaaggagaatgggaaaattagggtta |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| | |||| |||||||||||||| |||||||||| ||||||||||| |||||||||| |
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| T |
14248666 |
cggaactcagaaacagtgcaacgaaaagcatcaacacagccgagtga-----gaagaagccatagtagaaagatgaacgagaatgggaatattagggtta |
14248760 |
T |
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| Q |
119 |
actagaaagttttga |
133 |
Q |
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| T |
14248761 |
actagaaagttttga |
14248775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 14317213 - 14317252
Alignment:
| Q |
19 |
cggaactcagaaacagtgcaaccaaaagcatcaacacagc |
58 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
14317213 |
cggaactcagaaacagtgcaaccaaaagcatcaacacagc |
14317252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 1240 - 1206
Alignment:
| Q |
22 |
aactcagaaacagtgcaaccaaaagcatcaacaca |
56 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
1240 |
aacttagaaacagtgcaaccaaaagcatcaacaca |
1206 |
T |
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