View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15648_low_13 (Length: 229)
Name: NF15648_low_13
Description: NF15648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15648_low_13 |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 16529629 - 16529826
Alignment:
| Q |
18 |
agaacatatatcaatgataatattcttcttggaaatactnnnnnnnngaaaatcttaccaacataaccagcataataacttatatcagcttcttcttttg |
117 |
Q |
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| T |
16529629 |
agaacatatatcaatgataatattcttcttggaaatactaaaaaaaagaaaatcttaccaacataaccagcataataacttatatcagcttcttcttttg |
16529728 |
T |
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| Q |
118 |
caacattgaaatcccttacctgaacataagagtttcattattgaggagtatattatgtgcattaatcattttatcacagtagatcataccagtattat |
215 |
Q |
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| T |
16529729 |
caacgttgaaatcccttacctgaacataagagtttcattattgaggagtatattatgtgcattaatcattttatcacagtagatcataccagtattat |
16529826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 16589685 - 16589779
Alignment:
| Q |
68 |
aatcttaccaacataaccagcataataacttatatcagcttcttcttttgcaacattgaaatcccttacctgaacataagagtttcattattgag |
162 |
Q |
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| T |
16589685 |
aatcttaccaatataaccagcatagtaactaatatcagcttcttcttttgcaacattgaagtcccttacctaaaaataaatgttgcattattgag |
16589779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1194 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 454 - 648
Alignment:
| Q |
18 |
agaacatatatcaatgataatattcttcttggaaatactnnnnnnnngaaaatcttaccaacataaccagcataataacttatatcagcttcttcttttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
454 |
agaacatatatcaatgataatattcttcttggaaatactaaaaaaaagaaattcttaccaacataaccagcgtaataacttatatcagcttcttcttttg |
553 |
T |
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| Q |
118 |
caacattgaaatcccttacctgaacataagagtttcattattgaggagtatatta-tgtgcattaatcattttatcacagtagatcataccagtattat |
215 |
Q |
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| T |
554 |
caacgttgaaatcccttacctgaaaata----ttgcattattaaggattgtattattgtgcattaataagtttatcacattacaccataccagaattat |
648 |
T |
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