View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15648_low_9 (Length: 242)

Name: NF15648_low_9
Description: NF15648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15648_low_9
NF15648_low_9
[»] chr2 (3 HSPs)
chr2 (3-225)||(11599783-11600001)
chr2 (3-222)||(11587200-11587416)
chr2 (8-127)||(18927161-18927280)
[»] chr6 (1 HSPs)
chr6 (1-81)||(5538332-5538412)
[»] chr5 (1 HSPs)
chr5 (13-127)||(2053301-2053415)
[»] chr4 (1 HSPs)
chr4 (6-127)||(26194737-26194858)
[»] chr3 (3 HSPs)
chr3 (13-133)||(37120919-37121039)
chr3 (5-51)||(50732587-50732633)
chr3 (5-51)||(50780222-50780268)
[»] chr1 (1 HSPs)
chr1 (13-112)||(45339677-45339776)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 11600001 - 11599783
Alignment:
Q  3 ttctctagcaaagtttgctttagtttcaattgattttgtttggattgagaaaaatcttccatgtattgcttctgttgtcacaaccaatttggttcgtgtt 102  Q
    ||||||||| |||||| |||||   |||||||||||||||||||| ||||||  |  |||||||||| || |||||||| ||||| |||| ||||  |||    
T  11600001 ttctctagctaagtttacttta---tcaattgattttgtttggatcgagaaattttgtccatgtattactactgttgtcgcaaccgatttagttcccgtt 11599905  T
Q  103 taaatgaaatcatttatgtcaaaaacaaaaagaattgttaagtttaagttctttaagttccataattgattttgaatctcggtcatcaatcatatgacct 202  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||   ||||||||||| ||||||||||||  |||||||    
T  11599904 taaatgaaaccatttatgtcaaaaacaaaaagaattggtaagtttaagttccttaagttccatatccgattttgaatcccggtcatcaatcggatgacct 11599805  T
Q  203 aattggaagataatacgtaaata 225  Q
     |||| ||| |||||||||||||    
T  11599804 cattgtaag-taatacgtaaata 11599783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 11587416 - 11587200
Alignment:
Q  3 ttctctagcaaagtttgctttagtttcaattgattttgtttggattgagaaaaatcttccatgtattgcttctgttgtcacaaccaatttggttcgtgtt 102  Q
    ||||||||| |||||| |||||   |||||||||||||||||||| ||||||  |  |||||||||| || |||||||  ||||| |||| ||||  |||    
T  11587416 ttctctagctaagtttacttta---tcaattgattttgtttggatcgagaaattttgtccatgtattactactgttgttgcaaccgatttagttcccgtt 11587320  T
Q  103 taaatgaaatcatttatgtcaaaaacaaaaagaattgttaagtttaagttctttaagttccataattgattttgaatctcggtcatcaatcatatgacct 202  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||||||   ||||||||||| ||||||||||||  |||||||    
T  11587319 taaatgaaaccatttatgtcaaaaacaaaaggaattggtaagtttaagttccttaagttccatatccgattttgaatcccggtcatcaatcggatgacct 11587220  T
Q  203 aattggaagataatacgtaa 222  Q
     |||| ||| ||||||||||    
T  11587219 cattgtaaggtaatacgtaa 11587200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 18927280 - 18927161
Alignment:
Q  8 tagcaaagtttgctttagtttcaattgattttgtttggattgagaaaaatcttccatgtattgcttctgttgtcacaaccaatttggttcgtgtttaaat 107  Q
    |||| |||||||| |||| ||| | |||||||||||||||| || ||| || | | |||||| ||| ||||||| ||||| |||||||||   |||||||    
T  18927280 tagctaagtttgccttagattcgactgattttgtttggattaaggaaattccttcttgtattacttttgttgtcgcaaccgatttggttcacatttaaat 18927181  T
Q  108 gaaatcatttatgtcaaaaa 127  Q
    |||||  ||| |||||||||    
T  18927180 gaaattgtttttgtcaaaaa 18927161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 5538412 - 5538332
Alignment:
Q  1 cattctctagcaaagtttgctttagtttcaattgattttgtttggattgagaaaaatcttccatgtattgcttctgttgtc 81  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||  ||| |||||||||||| |||||    
T  5538412 cattatctagctaagtttgctttagtttcaattgattttgtttggattgaggaaaattctccttgtattgcttctattgtc 5538332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 2053415 - 2053301
Alignment:
Q  13 aagtttgctttagtttcaattgattttgtttggattgagaaaaatcttccatgtattgcttctgttgtcacaaccaatttggttcgtgtttaaatgaaat 112  Q
    |||||||| |||| ||| | ||||| ||||||||||||| ||| || | | |||||||||||||||||| ||||| ||||||||   |||||||||||||    
T  2053415 aagtttgccttagattcgagtgattctgtttggattgaggaaattccttcttgtattgcttctgttgtcgcaaccgatttggtttacgtttaaatgaaat 2053316  T
Q  113 catttatgtcaaaaa 127  Q
    | ||| | |||||||    
T  2053315 cgtttctatcaaaaa 2053301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 26194858 - 26194737
Alignment:
Q  6 tctagcaaagtttgctttagtttcaattgattttgtttggattgagaaaaatcttccatgtattgcttctgttgtcacaaccaatttggttcgtgtttaa 105  Q
    |||||| |||||||||||||||   ||||||| | ||||||||||| ||| ||  || |||||||||  |||||||| |||| |||| |||||  |||||    
T  26194858 tctagctaagtttgctttagttctgattgattctatttggattgaggaaattccaccttgtattgctcatgttgtcataaccgatttagttcgcttttaa 26194759  T
Q  106 atgaaatcatttatgtcaaaaa 127  Q
    |||||||| ||||||| |||||    
T  26194758 atgaaatcgtttatgtaaaaaa 26194737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 37120919 - 37121039
Alignment:
Q  13 aagtttgctttagtttcaattgattttgtttggattgagaaaaatcttccatgtattgcttctgttgtcacaaccaatttggttcgtgtttaaatgaaat 112  Q
    ||||||||||||| ||| | ||  | ||||||||||||| ||| || | | |||||||||||||||| | ||||| || |||||| ||||||||||||||    
T  37120919 aagtttgctttagattcgagtgtatctgtttggattgaggaaactccttcttgtattgcttctgttgccgcaaccgatatggttcatgtttaaatgaaat 37121018  T
Q  113 catttatgtcaaaaacaaaaa 133  Q
    | ||| |||||| || |||||    
T  37121019 cgtttttgtcaacaagaaaaa 37121039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 50732633 - 50732587
Alignment:
Q  5 ctctagcaaagtttgctttagtttcaattgattttgtttggattgag 51  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||    
T  50732633 ctctagctaagtttgctttagtttcaattgattcggtttggattgag 50732587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 50780222 - 50780268
Alignment:
Q  5 ctctagcaaagtttgctttagtttcaattgattttgtttggattgag 51  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||    
T  50780222 ctctagctaagtttgctttagtttcaattgattcggtttggattgag 50780268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 45339677 - 45339776
Alignment:
Q  13 aagtttgctttagtttcaattgattttgtttggattgagaaaaatcttccatgtattgcttctgttgtcacaaccaatttggttcgtgtttaaatgaaat 112  Q
    ||||||||||||| ||| | | ||  ||||| ||||||| ||| ||||||||||||||||| ||||||  ||||| |||  ||||  |||||||||||||    
T  45339677 aagtttgctttagattcgactaatactgtttagattgaggaaattcttccatgtattgcttttgttgttgcaaccgattcagttcacgtttaaatgaaat 45339776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University