View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15649_high_1 (Length: 731)

Name: NF15649_high_1
Description: NF15649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15649_high_1
NF15649_high_1
[»] chr3 (1 HSPs)
chr3 (19-716)||(8656624-8657322)


Alignment Details
Target: chr3 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 19 - 716
Target Start/End: Original strand, 8656624 - 8657322
Alignment:
Q  19 aaactcacttcatacttagatccaacccaaaattgaagcacaattttatcatagttcagacat-tataagcttaatttagagagaaacctaaatttgttc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||    
T  8656624 aaactcacttcatacttagatccaacccaaaattgaagcacaattttaacatagttcagatatatataagcttaatttagagagaaacctaaaatttttc 8656723  T
Q  118 tccattgtgttgtctgttgcgcttcgctatttgcctgagaagattaaaccatagttttcttcccaaggcatcttccatattcgccgttgttgttctctcg 217  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  8656724 tccattgtgttgtctgttgcgcgtcgctatttgcctgagaagatcaaaccatagttttcttcccaaggcatcttccatatccgccgttgttgctctctcg 8656823  T
Q  218 ttttccattaatcaccatctctaacctttaatcatcaaacaaaactcacaacaataatgtttgagatttttcaccttcctttcnnnnnnnactttgtaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||       ||||||||||    
T  8656824 ttttccattaatcaccatctctaacctttaatcatcaaacaaagctcacaacaacaatgtttgagatttttcaccttcctttcgttttttactttgtaaa 8656923  T
Q  318 ataaacccaattatattatgtatatttaaagaaaactgcatatcttgcagtaaaattaatacacgtcaataacaattacacatgacatatgcttcatcat 417  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8656924 ataaacccaattatattatgtatattcaaagaaaactgcatgtcttgcagtaaaattaatacacgtcaataacaattacgcatgacatatgcttcatcat 8657023  T
Q  418 aataaccttactagcgaaaacaccggcaccaatctcatatatcccttttttctactatgaaatattatactctctaaactctaacccgttcattttgaag 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8657024 aataaccttactagcgaaaacaccggcaccaatctcatatatcccttttttctactatgaaatattatactctctaaactctaacccgttcattttgaag 8657123  T
Q  518 tacattttctccatctcaacatcattttcaagag-ttggatccagaaaactccttaattattctcatacgaatgcatgctttcaaacaattgtatcatcc 616  Q
     ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8657124 cacattttctccatctcaacatcattttcaagagtttggatccagaaaactccttaattattctcatacgaatgcatgctttcaaacaattgtatcatcc 8657223  T
Q  617 aaatgtatattttaaacaatacaaatcatcttttatcaacaaagacgtgaaaaagtaatgtcttttatcatagaatttctgaacaaccaaaatcattcat 716  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8657224 aaatgtatattttaaacaatac-aatcatcttttatcaacaaagacgtgaaaaagtaatgtcttttatcatagaatttctgaacaaccaaaatcattcat 8657322  T

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