View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15649_high_6 (Length: 286)
Name: NF15649_high_6
Description: NF15649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15649_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 5592731 - 5592480
Alignment:
| Q |
1 |
attacataaataattactttcttccccaattatatccaacaagccacatttatagccctcagcagtacgcagaagctctaattgaagagttatctttgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||| ||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
5592731 |
attacataaataattactttcttccccaattatatctatcaagcaacgtttatagccctgagcagtatgcagaaaatctaattgaagagttatctttgaa |
5592632 |
T |
|
| Q |
101 |
tttacaggtatccacttgaactttgtgtttcacttttactttcactaaatgattaatggaagttacattagttatgaatatcatggtttataatagaggc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||| ||| || |
|
|
| T |
5592631 |
tttacaggtatccacttgaactttgtgtttcacttttgcttttactaaatgat------------------ttatgaatatcatggtttataacagaagc |
5592550 |
T |
|
| Q |
201 |
atttggtacatggaacaggctttacatgaaattggagcaagaaaatatgtgttatctgggttaggcctat |
270 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5592549 |
atttggtatatgtaacaggctttacatgaaattggagcaagaaaatatgtgttacctgggttaggcctat |
5592480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 5586505 - 5586352
Alignment:
| Q |
1 |
attacataaataattactttcttccccaattatatccaacaagccacatttatagccctcagcagtacgcagaagctctaattgaagagttatctttgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5586505 |
attacataaataattactttcttccccaattatatccaacaagacacatttatagccctcagcagtacgcagaagctctaattgaagagttatctttgaa |
5586406 |
T |
|
| Q |
101 |
tttacaggtatccacttgaactttgtgtttcacttttactttcactaaatgatt |
154 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5586405 |
tttacaggtatccccttgaactttgtgtttcacttttactttcactaaatgatt |
5586352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 152 - 270
Target Start/End: Complemental strand, 5586329 - 5586211
Alignment:
| Q |
152 |
attaatggaagttacattagttatgaatatcatggtttataatagaggcatttggtacatggaacaggctttacatgaaattggagcaagaaaatatgtg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5586329 |
attaatggaagttacattagttatgaatatcatggtttataatagaggcatttggtacatggaacaggctttacatgaaattggagcaagaaaatatgtg |
5586230 |
T |
|
| Q |
252 |
ttatctgggttaggcctat |
270 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
5586229 |
ttatctgggttaggtctat |
5586211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5572994 - 5572884
Alignment:
| Q |
1 |
attacataaataattactttcttccccaattatatccaacaagccacatttatagccctcagcagtacgcagaagctctaattgaagagttatctttgaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || |||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
5572994 |
attacataaacaattactttcttccccaattctacccaacaagtcacatttatagccctgagcagtatgcagaagctctaattcaagagttatctttgaa |
5572895 |
T |
|
| Q |
101 |
tttacaggtat |
111 |
Q |
| |
|
||||| ||||| |
|
|
| T |
5572894 |
tttactggtat |
5572884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 5576025 - 5575896
Alignment:
| Q |
1 |
attacataaataattactttcttccccaattatatccaacaagccacatttatagccctcagcagtacgcagaagctctaattgaagagttatctttgaa |
100 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| || |||||||| || |||||||||||| |||| || ||||||||||||||| ||||||||||||| || |
|
|
| T |
5576025 |
attacataaacaattactttcgtcctcaattctacccaacaagtcaaatttatagccctgagcaatatgcagaagctctaattcaagagttatctttaaa |
5575926 |
T |
|
| Q |
101 |
tttacaggtatccacttgaactttgtgttt |
130 |
Q |
| |
|
|||| |||||||||| |||| ||||||| |
|
|
| T |
5575925 |
tttattggtatccactcaaactctgtgttt |
5575896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 5575793 - 5575739
Alignment:
| Q |
214 |
aacaggctttacatgaaattggagcaagaaaatatgtgttatctgggttaggcct |
268 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
5575793 |
aacagactttacatgacattggagctagaaaatatgtgttagtagggttaggcct |
5575739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 5580614 - 5580576
Alignment:
| Q |
216 |
caggctttacatgaaattggagcaagaaaatatgtgtta |
254 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
5580614 |
caggctctacatgacattggagcaagaaaatatgtgtta |
5580576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University