View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15649_low_3 (Length: 580)
Name: NF15649_low_3
Description: NF15649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15649_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 5e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 277 - 556
Target Start/End: Complemental strand, 8084722 - 8084444
Alignment:
| Q |
277 |
gatcaaactgttaaaattaagttacgtgactcaacatataattttacctaaatttttatatannnnnnnacctcttgtcaaaaacaaaatacactctttt |
376 |
Q |
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| T |
8084722 |
gatcaaacggttaaa-ttaagttacgtgacacaacatataattttgcctaattttttatatattcttttacctcttgtcaaaaacaaaatacattctttt |
8084624 |
T |
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| Q |
377 |
ttgaaaagatacaaaattcattcttcttttnnnnnnntattattttatggattttgctaactaatattctctgaaaagtctttaaattttcaaactnnnn |
476 |
Q |
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| T |
8084623 |
tcaaaaaaatacaaaattcattcttcttttaaaaaattattattttatgggttttgctaactaatattttctggaaagtctttaagttttcaaactaaaa |
8084524 |
T |
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| Q |
477 |
nnngtatatgtaaaaaaccaaatgcttcaatttttatagaactaaatacacaaatttttattaaaatttaccatttaaag |
556 |
Q |
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| T |
8084523 |
aaattatatgtaaaaaagcaaatgcttcaatttttatataactaaatagacaaatttttattaaaatttaccatttaaag |
8084444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 8085015 - 8084977
Alignment:
| Q |
32 |
caatagaacatataatattttataatattctttgaatgt |
70 |
Q |
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| T |
8085015 |
caatagaacatataatattttataatattctttgaatgt |
8084977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 222
Target Start/End: Complemental strand, 8084806 - 8084775
Alignment:
| Q |
191 |
tgtttgcacaacaatattagatttgaagcttc |
222 |
Q |
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| T |
8084806 |
tgtttgcacaacaatattagatttgaagcttc |
8084775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 8084915 - 8084852
Alignment:
| Q |
132 |
aacttcaattttgtcgtcttgatcaatatgtat-tgaattttcagtcttaaaattcattgtgtt |
194 |
Q |
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| T |
8084915 |
aacttcaattttattgttttgatcaatttgtatatgaattttcaatcttcaaattcattgtgtt |
8084852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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