View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15649_low_5 (Length: 451)
Name: NF15649_low_5
Description: NF15649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15649_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 343 - 432
Target Start/End: Original strand, 44943712 - 44943801
Alignment:
| Q |
343 |
gatcgccaaaactgatattactacgaatatacatcaattatacattatctacagctgcattttgagctaagttgttaccagctaaaggat |
432 |
Q |
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| T |
44943712 |
gatcgccaaaactgatattactacgaatatacatcaattatacattatctacagctgcattttgagctaagttgttaccagctaaaggat |
44943801 |
T |
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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 44945371 - 44945455
Alignment:
| Q |
348 |
ccaaaactgatattactacgaatatacatcaattatacattatctacagctgcattttgagctaagttgttaccagctaaaggat |
432 |
Q |
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| T |
44945371 |
ccaaaactgtaattgctacgaatatacatcaattatacattatctacagctgcattttgagctaaactgttgccagctagaggat |
44945455 |
T |
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