View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15649_low_9 (Length: 308)
Name: NF15649_low_9
Description: NF15649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15649_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 54890386 - 54890679
Alignment:
| Q |
13 |
aatattgagaaaacaaaagtgattgaatgtaagatgtgtcggtgttggatactagcacacgctagacaccgactacaaagcttataagttataaccaata |
112 |
Q |
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| T |
54890386 |
aatattgagaaaacaaaagtgattgaatgtaagatgtgtcggtgttggatactagcacacgctagacaccgactacaaagcttataagttataaccaata |
54890485 |
T |
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| Q |
113 |
cgtcgtggttcaaactctaaaaactaatataatcatcactaaattactaacaagtaacatttgccccgattnnnnnnnngggtttactgtatcaaagata |
212 |
Q |
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| T |
54890486 |
tgtcgtggttcaaactctaaaaactaatataatcatcactaaattactaacaagtaacatttgccccgatt-aaaaaaagggttt-ctgtatcaaagata |
54890583 |
T |
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| Q |
213 |
gttccaattataagtttacaccactgcatgagaggagaatagtaccgggaaaacatcaaagaatcatcaatgcagaaatgaattgactaaaagaaa |
308 |
Q |
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| T |
54890584 |
gttccaattataagtttacaccactgcatgagaggagaatagtaccgggaaaacatcaaagaatcatcaatgcagaaatgaattgactgaaagaaa |
54890679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 54895892 - 54895978
Alignment:
| Q |
202 |
tatcaaagatagttccaattataagtttacaccactgcatgagaggagaatagtaccgggaaaacatcaaagaatcatcaatgcagaa |
289 |
Q |
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| T |
54895892 |
tatcaaagatacttccaattatatgtttagatcattgcatgagagaagaatagta-agtgaaaacatgaaagcatcataaatggagaa |
54895978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 38806906 - 38806946
Alignment:
| Q |
17 |
ttgagaaaacaaaagtgattgaatgtaagatgtgtcggtgt |
57 |
Q |
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| T |
38806906 |
ttgaaaaaacaaaagtgattgaatgtaacatgtgtcggtgt |
38806946 |
T |
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