View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1564_high_5 (Length: 222)
Name: NF1564_high_5
Description: NF1564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1564_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 6129524 - 6129698
Alignment:
| Q |
12 |
cacagacaagaaaatggtgaaaaggccaaacaataacttaactggcaaacttgtgacgaagtcttcctcggcataacgcgatgtaaggatcccaataaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6129524 |
cacagacaagaaaatggtgaaaaggccaaacaataacttaaccggcaaacttgtgacgaagtcttcctcggcataacgcgatgtaaggataccaataaat |
6129623 |
T |
|
| Q |
112 |
gtcaaaactgacgaagtagatgtaattagagataacgcgtctgctataatgaagagagaaaatgcatcattacac |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6129624 |
gtcaaaactgacgaagtagatgtaattagagataacgcgtctgctataatgaagagagaaaatgcatcattacac |
6129698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 6858445 - 6858611
Alignment:
| Q |
12 |
cacagacaagaaaatggtgaaaaggccaaacaataacttaactggcaaacttgtgacgaagtcttcctcggcataacgcgatgtaaggatcccaataaat |
111 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| ||| |||||| ||||||||| |
|
|
| T |
6858445 |
cacagacaagaaaattgtgaaaaggccaaacaataacttaattggcaaacttgtgacgaagtcttcctcagtataacgtgatataaggaccccaataaac |
6858544 |
T |
|
| Q |
112 |
gtcaaaactgacgaagtagatgtaattagagataacgcgtctgctataatgaagagagaaaatgcat |
178 |
Q |
| |
|
| ||||| || || | ||||| | | |||||||| ||||||| ||| || |||| ||| ||||||| |
|
|
| T |
6858545 |
attaaaacggatgatgaagatgcagtgagagataatgcgtctgatatgataaagaaagagaatgcat |
6858611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 6106379 - 6106213
Alignment:
| Q |
12 |
cacagacaagaaaatggtgaaaaggccaaacaataacttaactggcaaacttgtgacgaagtcttcctcggcataacgcgatgtaaggatcccaataaat |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| | |||||||| ||| ||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
6106379 |
cacagacaagaaaattgtgaaaaggccaaacaataacttagcgggcaaactcgtgttgaagtcttcttcagcataacgcgatgtaagaatcccaataaac |
6106280 |
T |
|
| Q |
112 |
gtcaaaactgacgaagtagatgtaattagagataacgcgtctgctataatgaagagagaaaatgcat |
178 |
Q |
| |
|
|||||||||| || | |||| ||| |||||||| | |||| || ||| |||| ||||||||||| |
|
|
| T |
6106279 |
atcaaaactgatgatgcggatgcaatgagagataaggaatctgttacaataaagaaagaaaatgcat |
6106213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University