View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1564_low_1 (Length: 345)
Name: NF1564_low_1
Description: NF1564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1564_low_1 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 10238688 - 10238352
Alignment:
| Q |
8 |
agatagatgtgttgaaaggggaggaagttgggtgtaggttgtatggagaggattgttatggtggtgagccgtttttcgtggcgagggaggatggtgatga |
107 |
Q |
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| T |
10238688 |
agatagatgtgttgaaaggggaggaagttgggtgtaggttgtatggagaggattgttatggtggtgagccgtttttcgtggctagggaagatggtgagga |
10238589 |
T |
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| Q |
108 |
agaggatgatggttatttagtgagttatgttcatgatgagaagaagggagagtctaagtttttggtgatggatgctaagtcgccggagtttgagattgtg |
207 |
Q |
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| T |
10238588 |
agaggatgatggttatttagtgagttatgtgcatgatgagaagaagggagagtcaaggtttttggtgatggatgctaagtctccggagtttgagattgtg |
10238489 |
T |
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| Q |
208 |
gcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcacgaggttgtcggtctcgtagggatgaagca |
307 |
Q |
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| T |
10238488 |
gcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcacgaggttgtcggtctccta-ggatgaagca |
10238390 |
T |
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| Q |
308 |
tagtttatcttgttttaagacataccattattgtcgtt |
345 |
Q |
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| T |
10238389 |
tagtttgtcttgttctaagacataccattattgtcgtt |
10238352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 10255920 - 10256217
Alignment:
| Q |
8 |
agatagatgtgttgaaaggggaggaagttgggtgtaggttgtatggagaggattgttatggtggtgagccgtttttcgtggcgagggaggatggtgatga |
107 |
Q |
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| T |
10255920 |
agatagatgtgttgaaaggggaggaagttgggtgtaggttgtatggagagggttgttatggtggtgagccgtttttcgtggcgagggaggatggtgaaga |
10256019 |
T |
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| Q |
108 |
agaggatgatggttatttagtgagttatgttcatgatgagaagaagggagagtctaagtttttggtgatggatgctaagtcgccggagtttgagattgtg |
207 |
Q |
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| T |
10256020 |
agaggatgatggttatttagtgagttatgtgcatgatgagaaaaagggagagtctaagtttttggtgatggatgctaagtcgccggagtttgagattgtg |
10256119 |
T |
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| Q |
208 |
gcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcacgaggttgtcggtctcgtagggatgaag |
305 |
Q |
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| T |
10256120 |
gcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcaccaagttgtcggtgtcgtagggatgaag |
10256217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 10229908 - 10229616
Alignment:
| Q |
8 |
agatagatgtgttgaaaggggaggaagttgggtgtaggttgtatggagaggattgttatggtggtgagccgtttttcgtggcgagggaggatggtgatga |
107 |
Q |
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| T |
10229908 |
agattgatgtgttgaaaggggaggaagttggatgtaggttgtatggagagggttgttatggtggtgagccgtttttcgtggcgatggaaggtggtgagga |
10229809 |
T |
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| Q |
108 |
agaggatgatggttatttagtgagttatgttcatgatgagaagaagggagagtctaagtttttggtgatggatgctaagtcgccggagtttgagattgtg |
207 |
Q |
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| T |
10229808 |
agaggatgatggttatttagtgagttatgtgcatgatgagaagaagggagaatctaagtttttggtgatggatgcgaagtcgccagagtttgagattgtg |
10229709 |
T |
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| Q |
208 |
gcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcacgaggttgtcggtctcgtaggga |
300 |
Q |
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| T |
10229708 |
gcggaggtgaagttgccgaggagggtgccctatggttttcatggattgtttgtgaagcaaagtgacataaccaagttgtcggtgtcgtaggga |
10229616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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