View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1564_low_2 (Length: 250)
Name: NF1564_low_2
Description: NF1564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1564_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 37 - 247
Target Start/End: Original strand, 21318897 - 21319118
Alignment:
| Q |
37 |
atacttttgtgtttatctatattattttaagtaccttcatttactttatggatctatccaatt----aggaatttatgaaaggattaatgagagtc---- |
128 |
Q |
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| T |
21318897 |
atacttttgtgtttatctattttattttaagtaccttcatttactttatggatctatccaattaggaaggaatttatgaaaggattaatgagaatcctag |
21318996 |
T |
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| Q |
129 |
ctatttcttaaaatacgtagtgcgatcacataactcttaat-atattttgtatataaatgtgaataaaagaatttatgcgaatt--aaaatattggtgaa |
225 |
Q |
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| T |
21318997 |
ctatttcttaaaatacgtagtgcgatcacataactcttaataatattttgtatataaatgtgaataaaagaatttatgcgaaataaaaaatattggtgaa |
21319096 |
T |
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| Q |
226 |
atcatgtaactacaaaatttta |
247 |
Q |
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| T |
21319097 |
atcatgtaactacaaaatttta |
21319118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 21315627 - 21315864
Alignment:
| Q |
9 |
caacaatattttgtgaactaggataaacatacttttgtgtttatctatattattttaagtaccttcatttactttatggatctatccaattaggaattta |
108 |
Q |
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| T |
21315627 |
caacaattttttgttaactagtataaatatacttgtgggttt-tctattttattttaaggaccttaatttaccttatggatgaatcaaattaggaatttg |
21315725 |
T |
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| Q |
109 |
tgaaaggattaatgagagtcctatttcttaaaatacgt-agtgcgatcacataactcttaatatattttgtatataaatgtgaataaaagaatttatgcg |
207 |
Q |
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| T |
21315726 |
tgaaaggatcaatcagaatcctatttcttaaaatattttagtgcgatcatataactcacaatatactttgtatatgaatgtgaatagaaaaaattgtgtg |
21315825 |
T |
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| Q |
208 |
aattaaaatattggtgaaatcatgtaactacaaaatttt |
246 |
Q |
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| T |
21315826 |
aatgaaaatattggtgaaatcatgtaactacataatttt |
21315864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 2014577 - 2014528
Alignment:
| Q |
156 |
acataactcttaatatattttgtatataaatgtgaataaaagaatttatg |
205 |
Q |
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| T |
2014577 |
acataaatcctaatctattttgtatatcaatgtgaataaaagaatttatg |
2014528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 33080620 - 33080572
Alignment:
| Q |
156 |
acataactcttaatatattttgtatataaatgtgaataaaagaatttat |
204 |
Q |
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| T |
33080620 |
acataaatcctaatatattttgtatatcaatgtgaatcaaagaatttat |
33080572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 26313503 - 26313551
Alignment:
| Q |
156 |
acataactcttaatatattttgtatataaatgtgaataaaagaatttat |
204 |
Q |
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|||||| ||||||| ||||||||||||||| |||||| ||||||||||| |
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| T |
26313503 |
acataaatcttaatttattttgtatataaacgtgaatcaaagaatttat |
26313551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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