View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1564_low_3 (Length: 236)
Name: NF1564_low_3
Description: NF1564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1564_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 215
Target Start/End: Original strand, 21316028 - 21316170
Alignment:
| Q |
68 |
attctaataactaataattttctatgttacccctttagtaagtgcgctaaagagacatacacaacagatgatctactaaaaatatttaattgtttttagc |
167 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||||| ||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21316028 |
attctaataattaacaattttctacgttacccttttagtaagtgtgataaagggacatacacaacacatgatctactaaaaatatttaattgttttta-- |
21316125 |
T |
|
| Q |
168 |
atgtcatgaactttatacactataaaatgaataaattatattctattt |
215 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21316126 |
---acatgagctttatacactataaaatgaataaatcatattctattt |
21316170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 21319346 - 21319412
Alignment:
| Q |
153 |
ttaattgtttttagcatgtcatgaactttatacactataaaatgaataaattatattctatttgtta |
219 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21319346 |
ttaattgtttttagcatatcatgagctttatacactataaaatgaataaattatattctatttgtta |
21319412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 21319241 - 21319342
Alignment:
| Q |
10 |
gactaaaaaatgtccccttttcataaccaaaggttgagagttaattnnnnnnnnnngtattctaataactaataattttctatgttacccctttagtaag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| | ||||||||||||||||| |
|
|
| T |
21319241 |
gactaaaaaatgtccccttttcataaccaaaggttgagagttaattaaaaaaaaaagtattctaataaataacaattttcgacgttacccctttagtaag |
21319340 |
T |
|
| Q |
110 |
tg |
111 |
Q |
| |
|
|| |
|
|
| T |
21319341 |
tg |
21319342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 24834424 - 24834377
Alignment:
| Q |
172 |
catgaactttatacactataaaatgaataaattatattctatttgttat |
220 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
24834424 |
catgaacttt-tacactataaagtgcataaattatgttctatttgttat |
24834377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University