View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15650_high_13 (Length: 330)

Name: NF15650_high_13
Description: NF15650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15650_high_13
NF15650_high_13
[»] chr8 (15 HSPs)
chr8 (160-306)||(38613611-38613757)
chr8 (33-163)||(6311097-6311229)
chr8 (33-161)||(7290080-7290211)
chr8 (35-160)||(36979184-36979308)
chr8 (35-160)||(4760242-4760366)
chr8 (35-160)||(30655448-30655572)
chr8 (33-139)||(39784977-39785086)
chr8 (54-160)||(18853356-18853457)
chr8 (41-160)||(18870734-18870849)
chr8 (56-139)||(25328456-25328540)
chr8 (35-169)||(10689309-10689442)
chr8 (35-124)||(33037972-33038063)
chr8 (56-139)||(35745213-35745298)
chr8 (65-139)||(10684452-10684528)
chr8 (86-162)||(19752609-19752683)
[»] chr5 (21 HSPs)
chr5 (33-161)||(1457315-1457446)
chr5 (33-160)||(27444771-27444901)
chr5 (33-160)||(43592080-43592210)
chr5 (33-160)||(43598525-43598655)
chr5 (33-160)||(43604017-43604147)
chr5 (33-160)||(43609509-43609639)
chr5 (33-160)||(27449615-27449745)
chr5 (33-143)||(30631227-30631338)
chr5 (33-139)||(28807729-28807837)
chr5 (33-139)||(15044512-15044618)
chr5 (95-160)||(31180079-31180142)
chr5 (56-139)||(37556802-37556887)
chr5 (56-139)||(37561624-37561709)
chr5 (35-160)||(38191983-38192105)
chr5 (35-160)||(38219208-38219330)
chr5 (56-139)||(2785197-2785282)
chr5 (56-139)||(31397171-31397256)
chr5 (56-139)||(31402028-31402113)
chr5 (56-121)||(33791158-33791223)
chr5 (104-160)||(35387474-35387527)
chr5 (56-121)||(33768021-33768086)
[»] chr4 (11 HSPs)
chr4 (33-161)||(51520257-51520388)
chr4 (33-139)||(9224560-9224668)
chr4 (33-139)||(9229347-9229455)
chr4 (33-161)||(56146865-56146996)
chr4 (34-139)||(3813846-3813954)
chr4 (33-139)||(18855549-18855657)
chr4 (35-139)||(45347973-45348079)
chr4 (35-139)||(45357452-45357558)
chr4 (35-160)||(24741748-24741871)
chr4 (33-139)||(5732486-5732593)
chr4 (35-160)||(29760449-29760572)
[»] scaffold0135 (1 HSPs)
scaffold0135 (33-139)||(35215-35323)
[»] chr7 (17 HSPs)
chr7 (33-139)||(12396735-12396843)
chr7 (33-139)||(12406155-12406263)
chr7 (56-139)||(24024506-24024589)
chr7 (33-139)||(4866553-4866661)
chr7 (33-139)||(31109737-31109844)
chr7 (56-162)||(2057763-2057866)
chr7 (35-160)||(20357713-20357837)
chr7 (33-139)||(19992135-19992243)
chr7 (33-139)||(21812393-21812501)
chr7 (35-160)||(1533608-1533730)
chr7 (35-160)||(21645818-21645940)
chr7 (85-160)||(2479148-2479221)
chr7 (85-164)||(47263485-47263562)
chr7 (65-139)||(16879894-16879970)
chr7 (65-139)||(16884750-16884826)
chr7 (65-139)||(24261511-24261587)
chr7 (65-139)||(24266390-24266466)
[»] chr6 (15 HSPs)
chr6 (33-139)||(11856795-11856903)
chr6 (33-139)||(14737730-14737838)
chr6 (33-139)||(14742589-14742697)
chr6 (33-139)||(22010850-22010958)
chr6 (33-139)||(6438324-6438431)
chr6 (33-139)||(28184325-28184436)
chr6 (56-139)||(28155749-28155832)
chr6 (35-160)||(5674934-5675057)
chr6 (35-160)||(30125960-30126084)
chr6 (56-139)||(6005239-6005324)
chr6 (56-121)||(5343322-5343387)
chr6 (56-121)||(33330625-33330690)
chr6 (56-139)||(33336122-33336207)
chr6 (56-139)||(16838566-16838651)
chr6 (85-160)||(31936398-31936470)
[»] chr3 (14 HSPs)
chr3 (33-139)||(22173348-22173456)
chr3 (35-162)||(7167049-7167174)
chr3 (33-139)||(18656256-18656363)
chr3 (35-160)||(2671752-2671876)
chr3 (57-160)||(40372986-40373085)
chr3 (35-161)||(8477170-8477295)
chr3 (33-160)||(28504020-28504145)
chr3 (56-160)||(8739254-8739354)
chr3 (56-160)||(9091492-9091592)
chr3 (56-139)||(8512037-8512122)
chr3 (56-139)||(8516917-8517002)
chr3 (56-139)||(2677266-2677351)
chr3 (56-139)||(2673110-2673195)
chr3 (56-139)||(10207755-10207840)
[»] chr2 (10 HSPs)
chr2 (33-139)||(44312777-44312885)
chr2 (35-162)||(11099093-11099219)
chr2 (33-139)||(32246607-32246716)
chr2 (33-139)||(39812141-39812250)
chr2 (35-160)||(14291295-14291419)
chr2 (35-160)||(9296567-9296691)
chr2 (56-139)||(19344243-19344327)
chr2 (56-139)||(19349101-19349185)
chr2 (35-160)||(25403443-25403565)
chr2 (35-160)||(25398305-25398427)
[»] chr1 (10 HSPs)
chr1 (33-139)||(25445244-25445352)
chr1 (33-139)||(39445322-39445430)
chr1 (33-139)||(44024027-44024135)
chr1 (61-139)||(41386571-41386650)
chr1 (56-139)||(41398060-41398144)
chr1 (33-139)||(1055166-1055274)
chr1 (56-121)||(43988644-43988709)
chr1 (63-124)||(24787564-24787624)
chr1 (35-160)||(24202932-24203054)
chr1 (104-160)||(19359079-19359132)
[»] scaffold0464 (1 HSPs)
scaffold0464 (33-139)||(185-293)
[»] scaffold0127 (1 HSPs)
scaffold0127 (61-139)||(34132-34211)
[»] scaffold0355 (2 HSPs)
scaffold0355 (56-139)||(9818-9902)
scaffold0355 (33-139)||(40-143)
[»] scaffold0978 (1 HSPs)
scaffold0978 (37-161)||(404-528)
[»] scaffold0479 (1 HSPs)
scaffold0479 (78-139)||(13171-13233)
[»] scaffold0197 (2 HSPs)
scaffold0197 (56-139)||(19343-19428)
scaffold0197 (65-139)||(14497-14573)
[»] scaffold0028 (1 HSPs)
scaffold0028 (56-139)||(149134-149219)
[»] scaffold0259 (1 HSPs)
scaffold0259 (56-139)||(2429-2514)
[»] scaffold0188 (1 HSPs)
scaffold0188 (35-160)||(24208-24331)
[»] scaffold0087 (1 HSPs)
scaffold0087 (85-160)||(44174-44247)
[»] scaffold0009 (1 HSPs)
scaffold0009 (65-139)||(182152-182228)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 160 - 306
Target Start/End: Complemental strand, 38613757 - 38613611
Alignment:
Q  160 agaagcaaaattcagcagattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 259  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613757 agaagcaaaatcgagctgattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 38613658  T
Q  260 aaaattactcataattttgaaacctgggaccagagatgatgatgatg 306  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  38613657 aaaattactcataattttgaaagctgggaccagagaagatgatgatg 38613611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 6311229 - 6311097
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6311229 tatacactagtctagggctgctttgttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 6311130  T
Q  131 ttggtgtgagtttcaaccggaatcacaacagaa 163  Q
    ||||||||||||||||||||| |||||||||||    
T  6311129 ttggtgtgagtttcaaccggattcacaacagaa 6311097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 7290080 - 7290211
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  7290080 tatacactagtctagggctgctttgttgttgtttgtttggagaccatttgttctcattgattaccactatctcttgctccacacatcaatgtttatttca 7290179  T
Q  131 ttggtgtgagttt-caaccggaatcacaacag 161  Q
    |||||||||||||  ||||||| |||||||||    
T  7290180 ttggtgtgagtttggaaccggattcacaacag 7290211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 36979308 - 36979184
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| |||||  |||||||    
T  36979308 tacactagtctagggctgtttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgtt--tttcatt 36979212  T
Q  133 ggtgtgagtttcaaccggaatcacaaca 160  Q
    ||||||||||||||||||| ||||||||    
T  36979211 ggtgtgagtttcaaccggattcacaaca 36979184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 4760242 - 4760366
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||| | ||||||||||||||||||| || |||||||||||| |||||  |||||||    
T  4760242 tacactagtctagggctgtttttgttgttgttgcttggaaaccattt-tgctcattgattaccactatctctagctccacacatctttgtt--tttcatt 4760338  T
Q  133 ggtgtgagtttcaaccggaatcacaaca 160  Q
    | ||||||||||||||||| ||||||||    
T  4760339 gatgtgagtttcaaccggattcacaaca 4760366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 30655572 - 30655448
Alignment:
Q  35 tacactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 131  Q
    |||||||||||||||||| |||| ||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||   ||||||    
T  30655572 tacactagtctagggctgttttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgt---tttcat 30655477  T
Q  132 tggtgtgagtttcaaccggaatcacaaca 160  Q
    |||||||||||||||||||| ||||||||    
T  30655476 tggtgtgagtttcaaccggattcacaaca 30655448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 39784977 - 39785086
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttc 129  Q
    ||||||||||  |||||||| |||  |||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||    
T  39784977 tatacactagcttagggctgttttgttgttattggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttc 39785076  T
Q  130 attggtgtga 139  Q
    ||||||||||    
T  39785077 attggtgtga 39785086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 18853356 - 18853457
Alignment:
Q  54 ttttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaat 153  Q
    |||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||    ||| |||| ||||||||||||||||||||| |    
T  18853356 ttttgttgtttgcttggaaaccatttga-ctcatagattaccactatctcttgctccacacatc----tttgtttcgttggtgtgagtttcaaccggatt 18853450  T
Q  154 cacaaca 160  Q
    |||||||    
T  18853451 cacaaca 18853457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 18870734 - 18870849
Alignment:
Q  41 agtctagggctggttttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgag 140  Q
    ||||||||||   ||||||||||||||||||||||||||   ||||| |||||||| |||| ||||||||||||||| ||||||   |||||||||||||    
T  18870734 agtctagggcgttttttgttgtttgcttggaaaccatttaa-ctcatagattaccattatctcttgctccacacatctttgttt---tcattggtgtgag 18870829  T
Q  141 tttcaaccggaatcacaaca 160  Q
    ||||||||||| ||||||||    
T  18870830 tttcaaccggattcacaaca 18870849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 25328456 - 25328540
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatttcattggtgtga 139  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| |||||    
T  25328456 ttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccgcacatcattgatttatttcattgttgtga 25328540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 10689309 - 10689442
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||  |||||| || ||||||||||  ||||||||||||||| |  ||||| ||||||||||||| ||||||||||||||| |||||  |||||||    
T  10689309 tacactacactagggttgtttttgttgttgttgcttggaaaccattaga-ctcatagattaccactatctcttgctccacacatctttgtt--tttcatt 10689405  T
Q  133 ggtgtgagtttcaaccggaatcacaacagaagcaaaa 169  Q
    ||||||||||||||||| || ||||||| || |||||    
T  10689406 ggtgtgagtttcaaccgaaaacacaacacaatcaaaa 10689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 33037972 - 33038063
Alignment:
Q  35 tacactagtctagggctggtt-ttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgttt 124  Q
    |||||||||||||||||| || ||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||||    
T  33037972 tacactagtctagggctgtttattgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgttt 33038063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 35745298 - 35745213
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 139  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  35745298 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 35745213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 10684452 - 10684528
Alignment:
Q  65 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  10684452 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 10684528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 19752609 - 19752683
Alignment:
Q  86 attgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 162  Q
    |||||||||||||  |  |||||||||||||| |||||| |||||||||||||| |||  |||||| ||||||||||    
T  19752609 attgattaccacttccttttgctccacacatctttgttt-tttcattggtgtga-tttttaccggattcacaacaga 19752683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 1457315 - 1457446
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1457315 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 1457414  T
Q  131 ttggtgtgagttt-caaccggaatcacaacag 161  Q
    |||||||||||||  ||||||| |||||||||    
T  1457415 ttggtgtgagtttggaaccggattcacaacag 1457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 27444901 - 27444771
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| | |  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27444901 tatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacacatcattgtttatttca 27444802  T
Q  131 ttggtgtgagttt-caaccggaatcacaaca 160  Q
    |||||||||||||  ||||||| ||||||||    
T  27444801 ttggtgtgagtttggaaccggattcacaaca 27444771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 43592210 - 43592080
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43592210 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 43592111  T
Q  131 ttggtgtgagttt-caaccggaatcacaaca 160  Q
    ||| ||||| |||  ||||||| ||||||||    
T  43592110 ttgatgtgactttggaaccggattcacaaca 43592080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 43598655 - 43598525
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43598655 tatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttca 43598556  T
Q  131 ttggtgtgagttt-caaccggaatcacaaca 160  Q
    ||||||||| |||  ||||||| ||||||||    
T  43598555 ttggtgtgactttggaaccggattcacaaca 43598525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 43604147 - 43604017
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43604147 tatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttca 43604048  T
Q  131 ttggtgtgagttt-caaccggaatcacaaca 160  Q
    ||||||||| |||  ||||||| ||||||||    
T  43604047 ttggtgtgactttggaaccggattcacaaca 43604017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 43609639 - 43609509
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43609639 tatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttca 43609540  T
Q  131 ttggtgtgagttt-caaccggaatcacaaca 160  Q
    ||||||||| |||  ||||||| ||||||||    
T  43609539 ttggtgtgactttggaaccggattcacaaca 43609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 27449745 - 27449615
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| | |  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  27449745 tatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacatatcattgtttatttca 27449646  T
Q  131 ttggtgtgagttt-caaccggaatcacaaca 160  Q
    |||||||||||||  ||||||| ||||||||    
T  27449645 ttggtgtgagtttggaaccggattcacaaca 27449615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 30631338 - 30631227
Alignment:
Q  33 tatacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| ||||||||||  |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  30631338 tatacactagtctagggctg-ttttgttgttgttgcttgaaaaccatttgttctcatagattaccactatctcttgctccacacatcattgtttatttca 30631240  T
Q  131 ttggtgtgagttt 143  Q
    || ||||||||||    
T  30631239 tttgtgtgagttt 30631227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 28807729 - 28807837
Alignment:
Q  33 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 130  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  28807729 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttca 28807828  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  28807829 ttggtgtga 28807837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 15044618 - 15044512
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||  |||||||    
T  15044618 tatacactagtctagggctgttttgttgttgttggtttggagaccatttgttctcattgattaccactatcacttgctctacacgtcattg--tatttca 15044521  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  15044520 ttggtgtga 15044512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 31180142 - 31180079
Alignment:
Q  95 cactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 160  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||    
T  31180142 cactatctcttgctccacacatcattgtta--ttcattggtgtgagtttcaaccggattcacaaca 31180079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 37556802 - 37556887
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 139  Q
    |||||||| |||||||  ||||||| |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37556802 ttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37556887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 37561624 - 37561709
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 139  Q
    |||||||| |||||||  ||||||| |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37561624 ttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 38192105 - 38191983
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  38192105 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 38192011  T
Q  133 ggtgtgagtttcaaccggaatcacaaca 160  Q
    ||||||||||||||||||| ||||||||    
T  38192010 ggtgtgagtttcaaccggattcacaaca 38191983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 38219330 - 38219208
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  38219330 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 38219236  T
Q  133 ggtgtgagtttcaaccggaatcacaaca 160  Q
    ||||||||||||||||||| ||||||||    
T  38219235 ggtgtgagtttcaaccggattcacaaca 38219208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 2785282 - 2785197
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 139  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2785282 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2785197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 31397171 - 31397256
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  31397171 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 31397256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 31402028 - 31402113
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  31402028 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 31402113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 33791223 - 33791158
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 121  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  33791223 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 33791158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 35387527 - 35387474
Alignment:
Q  104 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 160  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  35387527 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 35387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 33768086 - 33768021
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 121  Q
    |||||||| |||||||   ||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  33768086 ttgttgttagcttggaggtcatttgcactcatagattatctctatcacttgctccacacatcattg 33768021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 33 - 161
Target Start/End: Complemental strand, 51520388 - 51520257
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51520388 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 51520289  T
Q  131 ttggtgtgagttt-caaccggaatcacaacag 161  Q
    |||||||||||||  ||||||| |||||||||    
T  51520288 ttggtgtgagtttggaaccggattcacaacag 51520257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 9224560 - 9224668
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9224560 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 9224659  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  9224660 ttggtgtga 9224668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 9229347 - 9229455
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9229347 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 9229446  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  9229447 ttggtgtga 9229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 56146865 - 56146996
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  56146865 tatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttca 56146964  T
Q  131 ttggtgtgagttt-caaccggaatcacaacag 161  Q
    ||||||||| |||  ||||||| |||||||||    
T  56146965 ttggtgtgaatttggaaccggattcacaacag 56146996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 3813954 - 3813846
Alignment:
Q  34 atacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 130  Q
    ||||||||||||||| ||| |||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3813954 atacactagtctaggactgttttgttgttgtttgcttggagaccatttgctctcattgattaccactatcacttgctccacacatcattggtttatttca 3813855  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  3813854 ttggtgtga 3813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 18855657 - 18855549
Alignment:
Q  33 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 130  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  18855657 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttca 18855558  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  18855557 ttggtgtga 18855549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 45347973 - 45348079
Alignment:
Q  35 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||||||||| ||| |||  ||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45347973 tacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattgtttatttcatt 45348072  T
Q  133 ggtgtga 139  Q
    |||||||    
T  45348073 ggtgtga 45348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 45357452 - 45357558
Alignment:
Q  35 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||||||||| ||| |||  ||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45357452 tacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattgtttatttcatt 45357551  T
Q  133 ggtgtga 139  Q
    |||||||    
T  45357552 ggtgtga 45357558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 24741871 - 24741748
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||   |||||||    
T  24741871 tacactagtctagggctgtttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgt---tttcatt 24741776  T
Q  133 ggtgtgagtttcaaccggaatcacaaca 160  Q
    ||||||||||||||||||| ||||||||    
T  24741775 ggtgtgagtttcaaccggattcacaaca 24741748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 5732593 - 5732486
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||    
T  5732593 tatacactagcttagggctgttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttca 5732495  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  5732494 ttggtgtga 5732486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 29760572 - 29760449
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    ||||||||||||||| || ||||||||||  ||||||||||||||||  | | |||||||||||||||| ||||||||||||||| ||||||  ||||||    
T  29760572 tacactagtctagggttg-ttttgttgttgttgcttggaaaccattttgttt-attgattaccactatctcttgctccacacatctttgttt--ttcatt 29760477  T
Q  133 ggtgtgagtttcaaccggaatcacaaca 160  Q
    ||||||||||||||||||| ||||||||    
T  29760476 ggtgtgagtttcaaccggattcacaaca 29760449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 35215 - 35323
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35215 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 35314  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  35315 ttggtgtga 35323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 12396843 - 12396735
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12396843 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 12396744  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  12396743 ttggtgtga 12396735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 12406263 - 12406155
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12406263 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 12406164  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  12406163 ttggtgtga 12406155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 24024506 - 24024589
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 139  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24024506 ttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 24024589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 4866661 - 4866553
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||| ||| |||  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4866661 tatacactagtctaggactgttttgttgttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcattgtttatttca 4866562  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  4866561 ttggtgtga 4866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 31109737 - 31109844
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    ||||||||||| |||||||| |||  ||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  31109737 tatacactagt-tagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctgcacacatcattgtttatttca 31109835  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  31109836 ttggtgtga 31109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 2057866 - 2057763
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatca 155  Q
    |||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| |||    
T  2057866 ttgttgtttgcttggaaaccatttga-ctcatagattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattca 2057770  T
Q  156 caacaga 162  Q
    |||||||    
T  2057769 caacaga 2057763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 20357713 - 20357837
Alignment:
Q  35 tacactagtctagggctggttttgttgttt---gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 131  Q
    |||||||||||||||||| ||||||||||    ||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||| ||||||   ||||    
T  20357713 tacactagtctagggctgtttttgttgttgttagcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgttt---tcat 20357808  T
Q  132 tggtgtgagtttcaaccggaatcacaaca 160  Q
    |||||||||||||||||||| ||||||||    
T  20357809 tggtgtgagtttcaaccggattcacaaca 20357837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 19992243 - 19992135
Alignment:
Q  33 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 130  Q
    ||||||||||  |||||||| || |||||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||    
T  19992243 tatacactagcttagggctgtttgttgttgtaagcttggaagccatttgttctcattgattatcactatcacctgctccacacatctttggtttatttca 19992144  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  19992143 ttggtgtga 19992135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 21812393 - 21812501
Alignment:
Q  33 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 130  Q
    ||||||||||  |||||||| || |||||||| |||||||| ||||||| |||||| ||||||||||||| ||||||||||||||| || ||||||||||    
T  21812393 tatacactagcttagggctgtttgttgttgttagcttggaagccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttca 21812492  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  21812493 ttggtgtga 21812501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 1533608 - 1533730
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||| || |||||||||||||||||  |||||||||||  ||| ||||||||||||||||||||   |||||||||||||| ||||   |||||||    
T  1533608 tacactagactggggctggttttgttgttgttgcttggaaac--ttttttctcattgattaccactatattttgctccacacatctttgt---tttcatt 1533702  T
Q  133 ggtgtgagtttcaaccggaatcacaaca 160  Q
    ||||||||||| ||||||| ||||||||    
T  1533703 ggtgtgagttttaaccggattcacaaca 1533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 21645940 - 21645818
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||| ||||||||| ||||||||||  |||||||| ||  |||   ||||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  21645940 tacactagactagggctgtttttgttgttgttgcttggagacacttta--ctcatagattaccactcccttttgctccacacatctttgttta---catt 21645846  T
Q  133 ggtgtgagtttcaaccggaatcacaaca 160  Q
    ||||||||||| ||||||| ||||||||    
T  21645845 ggtgtgagttttaaccggattcacaaca 21645818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 2479221 - 2479148
Alignment:
Q  85 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 160  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  2479221 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 2479148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 47263562 - 47263485
Alignment:
Q  85 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaacagaag 164  Q
    |||||||||||||| ||  ||||||||| |||| ||||||  ||||||||||||| | |||||||||| ||||||||||||    
T  47263562 cattgattaccact-tcctttgctccacgcatctttgttt--ttcattggtgtgattatcaaccggaactcacaacagaag 47263485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 16879970 - 16879894
Alignment:
Q  65 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  16879970 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 16879894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 16884826 - 16884750
Alignment:
Q  65 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  16884826 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 16884750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 24261511 - 24261587
Alignment:
Q  65 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  24261511 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 24261587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 24266390 - 24266466
Alignment:
Q  65 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  24266390 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 24266466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 11856903 - 11856795
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11856903 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 11856804  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  11856803 ttggtgtga 11856795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 14737730 - 14737838
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14737730 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttca 14737829  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  14737830 ttggtgtga 14737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 14742589 - 14742697
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  |||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14742589 tatacactagtctagggctgttttgttgttgtatgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttca 14742688  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  14742689 ttggtgtga 14742697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 22010850 - 22010958
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||| ||||||||| | |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22010850 tatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 22010949  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  22010950 ttggtgtga 22010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 6438431 - 6438324
Alignment:
Q  33 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 131  Q
    ||||||||||  |||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6438431 tatacactagcttagggctgtttgttgttgtttgcttggaagccattggttctcattgattaccactatcacttgctccacacatcattgtttatttcat 6438332  T
Q  132 tggtgtga 139  Q
    ||||||||    
T  6438331 tggtgtga 6438324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 28184436 - 28184325
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccattt--gttctcattgattaccactatcacttgctccacacatcatt-gtttatt 127  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||||||  |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  28184436 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttttgttctcattgattatcactatcacttgctccacacatcattggtttatt 28184337  T
Q  128 tcattggtgtga 139  Q
    ||||||||||||    
T  28184336 tcattggtgtga 28184325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 28155749 - 28155832
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 139  Q
    |||||||| ||||| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  28155749 ttgttgttagcttgaagaccatttgctctcattgattatcactatcacttgctccacacatcattgtttattgcattggtgtga 28155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 5674934 - 5675057
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||| ||||||||||||||||||||  ||||||| || | ||| | ||| |||||||||||||||  |||||||||||||| ||||||   |||||    
T  5674934 tacactagactagggctggttttgttgttgttgcttgggaaactttt-tactctttgattaccactatcttttgctccacacatctttgttt---tcatt 5675029  T
Q  133 ggtgtgagtttcaaccggaatcacaaca 160  Q
    ||||||||||| ||||||| ||||||||    
T  5675030 ggtgtgagttttaaccggattcacaaca 5675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 30125960 - 30126084
Alignment:
Q  35 tacactagtctagggctggttttgttgt---ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 131  Q
    |||||||||||||||||| |||||||||   | ||||||| ||||||||  ||||| ||||| ||||| | ||||||||||||||| ||||||   ||||    
T  30125960 tacactagtctagggctgtttttgttgtagttagcttggagaccatttgg-ctcatagattatcactacctcttgctccacacatctttgttt---tcat 30126055  T
Q  132 tggtgtgagtttcaaccggaatcacaaca 160  Q
    |||||||| ||||||||||| ||||||||    
T  30126056 tggtgtgattttcaaccggattcacaaca 30126084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 6005324 - 6005239
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 139  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  6005324 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 6005239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 5343387 - 5343322
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 121  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  5343387 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 5343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 33330625 - 33330690
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 121  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  33330625 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 33330690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 33336122 - 33336207
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 139  Q
    |||||||| | |||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  33336122 ttgttgttagtttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 33336207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 16838651 - 16838566
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 139  Q
    |||||||| ||||| |  |||||||  ||||| ||||| | ||||||||||||||||| |||||| ||||||| ||||||||||||    
T  16838651 ttgttgttagcttgaaggccatttgcactcatagattatctctatcacttgctccacatatcattggtttattctcattggtgtga 16838566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 31936470 - 31936398
Alignment:
Q  85 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 160  Q
    ||||||||||||||  |  |||||||||||||| |||||  |||||||||||||| ||| ||||||| ||||||||    
T  31936470 cattgattaccacttccttttgctccacacatctttgtt--tttcattggtgtga-ttttaaccggattcacaaca 31936398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 22173348 - 22173456
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22173348 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 22173447  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  22173448 ttggtgtga 22173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 7167174 - 7167049
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||    
T  7167174 tacactagtctagggctg-ttttgttgttgttgcttggaaaccattt-tgctcatagattaccactatctcttgctccacacatctttgttt--ttcatt 7167079  T
Q  133 ggtgtgagtttcaaccggaatcacaacaga 162  Q
    ||||||||||||||||||| ||||||||||    
T  7167078 ggtgtgagtttcaaccggattcacaacaga 7167049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 18656363 - 18656256
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||    
T  18656363 tatacactagcttagggctgttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttca 18656265  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  18656264 ttggtgtga 18656256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 2671752 - 2671876
Alignment:
Q  35 tacactagtctagggctggttttgttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 131  Q
    |||||||| ||||||||| ||||||||||   |||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||| ||||   ||||||    
T  2671752 tacactagactagggctgtttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgt---tttcat 2671847  T
Q  132 tggtgtgagtttcaaccggaatcacaaca 160  Q
    |||||||||||| ||||||| ||||||||    
T  2671848 tggtgtgagttttaaccggattcacaaca 2671876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 40372986 - 40373085
Alignment:
Q  57 tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcac 156  Q
    ||||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||| ||||    
T  40372986 tgttgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccggattcac 40373081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 8477295 - 8477170
Alignment:
Q  35 tacactagtctagggctggttttgttgt--ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    ||||||||||||||||||||||||||||  |||||||| || | ||| | ||| |||||||||||||||  |||||||||||||| ||||   |||||||    
T  8477295 tacactagtctagggctggttttgttgttgttgcttgggaaac-tttttactctttgattaccactatcttttgctccacacatctttgt---tttcatt 8477200  T
Q  133 ggtgtgagtttca-accggaatcacaacag 161  Q
    ||||||||||| | |||||| |||||||||    
T  8477199 ggtgtgagttttataccggattcacaacag 8477170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 28504020 - 28504145
Alignment:
Q  33 tatacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||||||| ||||||| ||||||||||  |||||||||||||||| ||||||| ||||| ||||| |  ||||||||||||||||||||   ||||    
T  28504020 tatacactagtcaagggctg-ttttgttgttgttgcttggaaaccattt-ttctcatagattatcactaccttttgctccacacatcattgtt--attca 28504115  T
Q  131 ttggtgtgagtttcaaccggaatcacaaca 160  Q
    ||||||||||||   |||||| ||||||||    
T  28504116 ttggtgtgagttaagaccggattcacaaca 28504145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 8739254 - 8739354
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatca 155  Q
    ||||| |||||||||||||||||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | |||    
T  8739254 ttgttatttgcttggaaaccatttga-ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattca 8739349  T
Q  156 caaca 160  Q
    |||||    
T  8739350 caaca 8739354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 9091492 - 9091592
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatca 155  Q
    ||||| |||||||||||||||||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | |||    
T  9091492 ttgttatttgcttggaaaccatttga-ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattca 9091587  T
Q  156 caaca 160  Q
    |||||    
T  9091588 caaca 9091592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 8512122 - 8512037
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||| |||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8512122 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8512037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 8517002 - 8516917
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||| |||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8517002 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8516917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 2677266 - 2677351
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 139  Q
    |||||||| |||||||  ||||||| |||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2677266 ttgttgttagcttggaggccatttgctctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2677351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 2673110 - 2673195
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 139  Q
    |||||||| |||||||  ||||||  |||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2673110 ttgttgttagcttggaggccatttactctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2673195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 10207840 - 10207755
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 139  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  10207840 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 10207755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 44312777 - 44312885
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 130  Q
    |||||||| ||||||||| | |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312777 tatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 44312876  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  44312877 ttggtgtga 44312885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 11099093 - 11099219
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| |||||  |||||||    
T  11099093 tacactagtctagggctgtttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgtt--tttcatt 11099189  T
Q  133 ggtgtgagtttcaaccggaatcacaacaga 162  Q
    ||||||||||||||||||| ||||||||||    
T  11099190 ggtgtgagtttcaaccggattcacaacaga 11099219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 32246716 - 32246607
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttc 129  Q
    |||||||||||||||| ||| |||  ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  32246716 tatacactagtctaggactgttttgttgttgttagcttggagaccatttgttctcatagattaccactatcacttgctccacacatcattggtttatttc 32246617  T
Q  130 attggtgtga 139  Q
    ||||||||||    
T  32246616 attggtgtga 32246607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 39812141 - 39812250
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttc 129  Q
    ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||    
T  39812141 tatacactagcttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttc 39812240  T
Q  130 attggtgtga 139  Q
    ||||||||||    
T  39812241 attggtgtga 39812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 14291419 - 14291295
Alignment:
Q  35 tacactagtctagggctggttttgttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 131  Q
    |||| ||||||||||||| ||||||||||   |||||||||||||||| | | ||||||||||||||||| ||||||||||||| | ||||   ||||||    
T  14291419 tacattagtctagggctgtttttgttgttgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcat 14291324  T
Q  132 tggtgtgagtttcaaccggaatcacaaca 160  Q
    |||||||||||| ||||||| ||||||||    
T  14291323 tggtgtgagttttaaccggattcacaaca 14291295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 9296567 - 9296691
Alignment:
Q  35 tacactagtctagggctggttttgttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 131  Q
    |||||||| ||||||||| ||||||||||   |||||||||||||||| | ||||| ||||||||||| |  |||||||||||||| ||||||   ||||    
T  9296567 tacactagactagggctgtttttgttgttgtttgcttggaaaccattt-tgctcatagattaccactaccttttgctccacacatctttgttt---tcat 9296662  T
Q  132 tggtgtgagtttcaaccggaatcacaaca 160  Q
    |||||||||||| ||||||| ||||||||    
T  9296663 tggtgtgagttttaaccggattcacaaca 9296691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 19344327 - 19344243
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 139  Q
    |||||||| |||||||  ||||||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  19344327 ttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19344243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 19349185 - 19349101
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 139  Q
    |||||||| |||||||  ||||||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  19349185 ttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19349101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 25403565 - 25403443
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  25403565 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 25403471  T
Q  133 ggtgtgagtttcaaccggaatcacaaca 160  Q
    ||||||||||||||||||| ||||||||    
T  25403470 ggtgtgagtttcaaccggattcacaaca 25403443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 25398427 - 25398305
Alignment:
Q  35 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  25398427 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 25398333  T
Q  133 ggtgtgagtttcaaccggaatcacaaca 160  Q
    |||||||||||||||| || ||||||||    
T  25398332 ggtgtgagtttcaaccagattcacaaca 25398305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 25445244 - 25445352
Alignment:
Q  33 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 130  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  25445244 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcgcttgctccacacatcattggtttatttca 25445343  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  25445344 ttggtgtga 25445352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 39445430 - 39445322
Alignment:
Q  33 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 130  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  39445430 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttcacattgattatcactatcacttgctccacacatcattggtttatttca 39445331  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  39445330 ttggtgtga 39445322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 44024027 - 44024135
Alignment:
Q  33 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 130  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||    
T  44024027 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcagttgctccacacatcattggtttatttca 44024126  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  44024127 ttggtgtga 44024135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 41386650 - 41386571
Alignment:
Q  61 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 139  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  41386650 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 41386571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 41398144 - 41398060
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 139  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  41398144 ttgttgtttgcttggagaccatatgttctcattgattatcactatcacttgctccacacataattggtttatttcattggtgtga 41398060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 1055166 - 1055274
Alignment:
Q  33 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 130  Q
    ||||||||||  |||||||| || |||||||  ||||||||  ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  1055166 tatacactagcttagggctgtttgttgttgtaagcttggaagacatttgttcacattgattatcactatcacttgctccacacatcattggtttatttca 1055265  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  1055266 ttggtgtga 1055274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 43988644 - 43988709
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 121  Q
    |||||||| |||||||| ||||||| |||||| ||||| | |||||||||||||||||||||||||    
T  43988644 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattg 43988709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 24787564 - 24787624
Alignment:
Q  63 ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgttt 124  Q
    ||||||||||||||||| | |||||| |||||||||||| ||||||||||||||| ||||||    
T  24787564 ttgcttggaaaccattt-tgctcatttattaccactatctcttgctccacacatctttgttt 24787624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 24202932 - 24203054
Alignment:
Q  35 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 132  Q
    ||||||||| |||||||| |||  ||||||||||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| ||||||   |||||    
T  24202932 tacactagtttagggctgttttgttgttgtttgcttggagacacttta--cacatagattaccactcccttttgctccacacatctttgttt---tcatt 24203026  T
Q  133 ggtgtgagtttcaaccggaatcacaaca 160  Q
    ||||||||||| ||||||| ||||||||    
T  24203027 ggtgtgagttttaaccggattcacaaca 24203054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 19359079 - 19359132
Alignment:
Q  104 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 160  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  19359079 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 19359132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 293 - 185
Alignment:
Q  33 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 130  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||    
T  293 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcaccatcacttgctccacacatctttggtttatttca 194  T
Q  131 ttggtgtga 139  Q
    |||||||||    
T  193 ttggtgtga 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 34132 - 34211
Alignment:
Q  61 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 139  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  34132 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 34211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 9818 - 9902
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 139  Q
    |||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  9818 ttgttgtttggttggagaccatttgctctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 9902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 40 - 143
Alignment:
Q  33 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttc 129  Q
    ||||||||||  |||||||| |||  |||||||| |||||| |||||||| ||||||||||||      ||||||||||||||||||||| ||||||||     
T  40 tatacactagcttagggctgttttgttgttgtttacttggagaccatttgctctcattgatta------tcacttgctccacacatcattggtttattta 133  T
Q  130 attggtgtga 139  Q
    ||||||||||    
T  134 attggtgtga 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 404 - 528
Alignment:
Q  37 cactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattg 133  Q
    ||||||| |||||||| |||| ||||||  |||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| ||||   ||||||||    
T  404 cactagtttagggctgttttttgttgttgttgcttggaaaccatttttgctcatagattaccactatctcttgctccacacatctttgt---tttcattg 500  T
Q  134 gtgtgagtttcaaccggaatcacaacag 161  Q
    |||||||||| ||  ||| |||||||||    
T  501 gtgtgagttttaaatggattcacaacag 528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 13233 - 13171
Alignment:
Q  78 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 139  Q
    |||||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||    
T  13233 ttgttctcattgattatcactatcacttgctccacatatctttggtttatttcattggtgtga 13171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 19343 - 19428
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  19343 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 19428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 14497 - 14573
Alignment:
Q  65 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  14497 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 14573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 149134 - 149219
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  149134 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 149219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 2429 - 2514
Alignment:
Q  56 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||| |||||||  |||||||  ||||| ||||| |  |||||||||||||||||||||||| |||||| ||||||||||||    
T  2429 ttgttgttagcttggaggccatttgcactcatggattatctttatcacttgctccacacatcattgatttattctcattggtgtga 2514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 24208 - 24331
Alignment:
Q  35 tacactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 131  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   |||    
T  24208 tacactagtctagggctggtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---cat 24302  T
Q  132 tggtgtgagtttcaaccggaatcacaaca 160  Q
    |||||||||||| ||||||| ||||||||    
T  24303 tggtgtgagttttaaccggattcacaaca 24331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 44174 - 44247
Alignment:
Q  85 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 160  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  44174 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 44247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 182152 - 182228
Alignment:
Q  65 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 139  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  182152 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 182228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University