View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15651_low_3 (Length: 206)

Name: NF15651_low_3
Description: NF15651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15651_low_3
NF15651_low_3
[»] chr5 (9 HSPs)
chr5 (41-102)||(29851735-29851796)
chr5 (46-102)||(29870646-29870702)
chr5 (105-138)||(30714756-30714789)
chr5 (46-102)||(30058757-30058813)
chr5 (54-102)||(30481792-30481840)
chr5 (108-137)||(29870580-29870609)
chr5 (105-138)||(30678954-30678987)
chr5 (110-138)||(30244072-30244100)
chr5 (110-138)||(30434201-30434229)
[»] chr4 (2 HSPs)
chr4 (46-107)||(20298317-20298378)
chr4 (108-137)||(20298405-20298434)


Alignment Details
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 29851796 - 29851735
Alignment:
Q  41 ttatatattgtcattgttgacttctttggaacccattcctcagaaagagatccagagtacat 102  Q
    ||||||||| |||||||||||||||||| ||||||||||  || ||||||||||| ||||||    
T  29851796 ttatatattctcattgttgacttctttgtaacccattccgtaggaagagatccagggtacat 29851735  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 29870702 - 29870646
Alignment:
Q  46 tattgtcattgttgacttctttggaacccattcctcagaaagagatccagagtacat 102  Q
    |||| ||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||    
T  29870702 tattctcattgtcgacatctttggaacccattccgcaggaagagatccagagtacat 29870646  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 30714756 - 30714789
Alignment:
Q  105 aattgttctaattcaggtaattttcttcatcata 138  Q
    ||||||||||||||||||||||||||||||||||    
T  30714756 aattgttctaattcaggtaattttcttcatcata 30714789  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 30058813 - 30058757
Alignment:
Q  46 tattgtcattgttgacttctttggaacccattcctcagaaagagatccagagtacat 102  Q
    |||| ||||||| ||| ||||||||||||||||  ||| ||||||||||||||||||    
T  30058813 tattctcattgtcgacatctttggaacccattctgcaggaagagatccagagtacat 30058757  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 30481840 - 30481792
Alignment:
Q  54 ttgttgacttctttggaacccattcctcagaaagagatccagagtacat 102  Q
    |||||||||| ||||||||||||||| ||| |||||||||||| |||||    
T  30481840 ttgttgacttatttggaacccattccgcaggaagagatccagactacat 30481792  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 29870609 - 29870580
Alignment:
Q  108 tgttctaattcaggtaattttcttcatcat 137  Q
    ||||||||||||||||||||||||||||||    
T  29870609 tgttctaattcaggtaattttcttcatcat 29870580  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 30678954 - 30678987
Alignment:
Q  105 aattgttctaattcaggtaattttcttcatcata 138  Q
    |||||||||||||| |||||||||||||||||||    
T  30678954 aattgttctaattctggtaattttcttcatcata 30678987  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 30244072 - 30244100
Alignment:
Q  110 ttctaattcaggtaattttcttcatcata 138  Q
    |||||||||||||||||||||||||||||    
T  30244072 ttctaattcaggtaattttcttcatcata 30244100  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 30434229 - 30434201
Alignment:
Q  110 ttctaattcaggtaattttcttcatcata 138  Q
    |||||||||||||||||||||||||||||    
T  30434229 ttctaattcaggtaattttcttcatcata 30434201  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 20298317 - 20298378
Alignment:
Q  46 tattgtcattgttgacttctttggaacccattcctcagaaagagatccagagtacataaaat 107  Q
    |||| ||| |||||||||||||||||||| |||   ||||||||||||||||||||| ||||    
T  20298317 tattctcaatgttgacttctttggaacccgttctgtagaaagagatccagagtacatgaaat 20298378  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 20298405 - 20298434
Alignment:
Q  108 tgttctaattcaggtaattttcttcatcat 137  Q
    ||||||||||||||||||||||||||||||    
T  20298405 tgttctaattcaggtaattttcttcatcat 20298434  T

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