View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15652_high_1 (Length: 238)
Name: NF15652_high_1
Description: NF15652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15652_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 18015224 - 18015394
Alignment:
| Q |
1 |
tttaggagacattttctttttattgaatagtcataacaagatcttttgactcaatagaccatatcaatgaacaagnnnnnnncaacaatttcttaatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18015224 |
tttaggagacattttctttttattgaatagtcataacaagatcatttgactcaatagaccatatcaatgaacaagaaaaaaacaacaatttcttaatcaa |
18015323 |
T |
|
| Q |
101 |
tcaacactaaaagtcaaagtcaatgtcaacgtg-cctgcgtgaggattacgttacaagtgaggaaaattgg |
170 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18015324 |
tcaacactaaaagtcaaagtcaatgtcaatgtgccctgcgtgaggattacgttacaagtgaggaaaattgg |
18015394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 18015433 - 18015473
Alignment:
| Q |
180 |
ttctcatatggaagtttttatgtaataaaatccctataaaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18015433 |
ttctcatatggaagtttttatgtaataaaatcccaataaaa |
18015473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 3064096 - 3063926
Alignment:
| Q |
1 |
tttaggagacattttctttttattgaatagtcataacaagatcttttgactcaatagaccatatcaatgaacaagnnnnnnncaacaatttcttaatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3064096 |
tttaggagacattttctttttattgaatagtcataacaagatcatttgactcaatagaccatatcaatgaacaagaaaaaaacaacaatttcttaatcaa |
3063997 |
T |
|
| Q |
101 |
tcaacactaaaagtcaaagtcaatgtcaacgtg-cctgcgtgaggattacgttacaagtgaggaaaattgg |
170 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3063996 |
tcaacactaaaagtcaaagtcaatgtcaatgtgccctgcgtgaggattacgttacaagtgaggaaaattgg |
3063926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 3063887 - 3063847
Alignment:
| Q |
180 |
ttctcatatggaagtttttatgtaataaaatccctataaaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3063887 |
ttctcatatggaagtttttatgtaataaaatcccaataaaa |
3063847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University