View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15652_high_1_N (Length: 504)
Name: NF15652_high_1_N
Description: NF15652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15652_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 27 - 486
Target Start/End: Original strand, 3716082 - 3716540
Alignment:
| Q |
27 |
aaaattactaagaaaggatgtaattggaatttcagaaaattcaagaaatcttttttaatgactacttgcgcaacgggatatatactaaaaaataacaaca |
126 |
Q |
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| T |
3716082 |
aaaattactaagaaaggatgtaattggaatttcagaaaattcaagaaatattttttaatgactacttgcgcaacgggatatatcctaaaaaataacaaca |
3716181 |
T |
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| Q |
127 |
atgcttggggaaggggctttcatttaattttctttttccgaaagaaaattggcttggtcaaggggttaaacgtaaaccaaagacctaaaccatactatat |
226 |
Q |
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| T |
3716182 |
atgcttggggaaggggctttcatttaattttctttttccgaaagaaaattggcttggtcaaggggttaaacgtaaaccaaagacctaaaccatactatat |
3716281 |
T |
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| Q |
227 |
aaatatagaagccacgccaaaaaataaaatagacgaatacacaaaagcgatttcagatccaaaaactgctgctcgatggcttggtttattaaaagcagca |
326 |
Q |
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| T |
3716282 |
aaatatagaaaccacgccaagaaa-agaatagacgaatacacaaaagcgatttcagatccaaaaagtgcttctcgatggcttggtttattaaaagcagca |
3716380 |
T |
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| Q |
327 |
tgtcgttcatcgcaggaaccggtttaggagtgtacatagctcagaactacaacgtaccaaacgtgaagaagctcgcttccatggctgtttcggtcgcgag |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3716381 |
tgtcgttcatcgcaggaaccggtttaggagtgtacatagctcagaactacaacgtaccaaacgtgaagaagcttgcttccatggctgtttcggtcgcgag |
3716480 |
T |
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| Q |
427 |
tcacctagaacaggcttataggaaacccaagcctgagtctaacaacaaagatgatgatgt |
486 |
Q |
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| T |
3716481 |
tcacctagaacaggcttataggaaacccaagcctgagtctaacaacaaagacgatgatgt |
3716540 |
T |
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