View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15652_high_2 (Length: 443)
Name: NF15652_high_2
Description: NF15652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15652_high_2 |
 | |
|
| [»] chr8 (10 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 29 - 443
Target Start/End: Original strand, 1962905 - 1963319
Alignment:
| Q |
29 |
acttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcggga |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1962905 |
acttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcggga |
1963004 |
T |
|
| Q |
129 |
ttttcttgacctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttctaattaatagc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1963005 |
ttttcttgacctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttcttattaatagc |
1963104 |
T |
|
| Q |
229 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963105 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagatgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
1963204 |
T |
|
| Q |
329 |
catctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963205 |
catctggtgatgatgctaataagtttgagtgtctgacatggttggacaaacaatgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
1963304 |
T |
|
| Q |
429 |
ttcgcaagaacaaat |
443 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1963305 |
ttcgcaagaacaaat |
1963319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 29 - 443
Target Start/End: Complemental strand, 2015524 - 2015110
Alignment:
| Q |
29 |
acttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcggga |
128 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
2015524 |
acttctatttgctcaagttagataaggaaacatcatgcgagtacagagatcttcctgggcctattcaaataccaggtagtgttccgattcatggtcggga |
2015425 |
T |
|
| Q |
129 |
ttttcttgacctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttctaattaatagc |
228 |
Q |
| |
|
| || |||| ||||||||||||||||| |||||||||||||| | ||| |||||| ||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
2015424 |
tctttttgagctagctcaagatagatccagtcaatcttacaaatacttactccaaggtgttgaaaaattgcgtctttttgatggtattcttattaatagt |
2015325 |
T |
|
| Q |
229 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
328 |
Q |
| |
|
||| | ||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2015324 |
ttcatagaaatcgaaaacggtcctatagaagcactgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
2015225 |
T |
|
| Q |
329 |
catctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||| ||||||| ||||| || |||||||| ||||| |
|
|
| T |
2015224 |
catctggtgatgatgctaataagtttgaatgtctggcatggttggacaaacaacggccttgttcagttctgtatgtgtctttcgggagtggtggaacact |
2015125 |
T |
|
| Q |
429 |
ttcgcaagaacaaat |
443 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2015124 |
ttcgcaagaacaaat |
2015110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 29 - 443
Target Start/End: Complemental strand, 2018907 - 2018493
Alignment:
| Q |
29 |
acttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcggga |
128 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||||| |||||| |||||||| ||||||||||||||||||||| ||||| || |||||||||| ||| |
|
|
| T |
2018907 |
acttctatttgctcaagttgaataaggaaacatcatgtcagtacaaagatcttctagagcctattcaaataccaggctgtgtaccaattcatggtcagga |
2018808 |
T |
|
| Q |
129 |
ttttcttgacctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttctaattaatagc |
228 |
Q |
| |
|
| || |||||| |||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
2018807 |
tcttgttgaccaagctcaagatagatcaagtcaatcttacaaattcttacttgaacgtgttgaaaaattccgtctttttgatggtattcttattaatagc |
2018708 |
T |
|
| Q |
229 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
328 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| | ||||| || |||||| |||| | ||| |||||||||||||| ||||||||||| | ||| | |
|
|
| T |
2018707 |
ttcctagaaattgaaaaaggtcctatagaagcactcacagaagacagaagtggcaaccctgatgtttatgctgttggaccaattatccaaacgccaacca |
2018608 |
T |
|
| Q |
329 |
catctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
428 |
Q |
| |
|
||| |||||||||| |||| ||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2018607 |
aatcgggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacact |
2018508 |
T |
|
| Q |
429 |
ttcgcaagaacaaat |
443 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2018507 |
ttcgcaagaacaaat |
2018493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 30 - 443
Target Start/End: Complemental strand, 2012124 - 2011711
Alignment:
| Q |
30 |
cttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggat |
129 |
Q |
| |
|
|||| |||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||| || |||| || || || || | ||||| ||||| |
|
|
| T |
2012124 |
cttctatttgcctaagttggatgaggaaacaacatgtgagtacagagatctcccagagcctatcaaagtaccgggctgcgtaccactccatggcagggat |
2012025 |
T |
|
| Q |
130 |
tttcttgacc-tagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttctaattaatagc |
228 |
Q |
| |
|
| ||||||| ||| ||||||||||||||||||| ||||||| | ||| || ||| |||| ||| || || || |||||||||||| |||||||| |
|
|
| T |
2012024 |
ct-cttgaccatagttcaagatagatcaagtcaagcttacaaatacttccttcaacatgttaaaagtttaagttttgctgatggtgttcttgttaatagc |
2011926 |
T |
|
| Q |
229 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
328 |
Q |
| |
|
||| | ||||| |||| ||| |||||| | ||| ||||||| |||||||||| |||| | ||| ||| ||||||||||||| ||||| ||| ||||| |
|
|
| T |
2011925 |
ttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcatccagacagtaacag |
2011826 |
T |
|
| Q |
329 |
catctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
428 |
Q |
| |
|
|||| ||||||||||||| || ||||||||| |||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
2011825 |
gttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacact |
2011726 |
T |
|
| Q |
429 |
ttcgcaagaacaaat |
443 |
Q |
| |
|
||| || |||||||| |
|
|
| T |
2011725 |
ttcacacgaacaaat |
2011711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 30 - 431
Target Start/End: Complemental strand, 2008509 - 2008108
Alignment:
| Q |
30 |
cttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggat |
129 |
Q |
| |
|
|||| |||||| ||| ||||| ||||||| ||||||||||| |||||| | | ||||||||| |||||||||||||||| || | ||||| ||||| |
|
|
| T |
2008509 |
cttctatttgcctaagctggatgaggaaacatcatgtgagtatagagatatactagagcctataaaaataccaggttgtgtaccactccatggcagggat |
2008410 |
T |
|
| Q |
130 |
tttcttgacc-tagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttctaattaatagc |
228 |
Q |
| |
|
|| ||||| | ||||||||||||||||||||||| ||||||| ||| |||| || |||| || || || | |||||||||||| |||||||| |
|
|
| T |
2008409 |
tt-cttgagcatagctcaagatagatcaagtcaagcttacaaacacttcctcccatttgttaaacttttaagttctgctgatggtgttcttgttaatagc |
2008311 |
T |
|
| Q |
229 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
328 |
Q |
| |
|
||||| ||||| || | ||||||| || ||||||| ||| || ||| |||| |||| || |||||| |||||||||| |||||| ||||| ||||| |
|
|
| T |
2008310 |
ttcctagaaatagagatgggtcctctaagtgcaatgaaagaggagggaggtgacaaccctccagtgtatcctgttggacctattatcgaaacagaaacaa |
2008211 |
T |
|
| Q |
329 |
catctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
428 |
Q |
| |
|
||||||||||||||||||| || ||||||||| |||||||| ||||| | |||||||| ||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
2008210 |
aatctggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcaaccttgttcggttttgtatgtatcttttgggagtggaggtacact |
2008111 |
T |
|
| Q |
429 |
ttc |
431 |
Q |
| |
|
||| |
|
|
| T |
2008110 |
ttc |
2008108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 186 - 374
Target Start/End: Original strand, 2432951 - 2433139
Alignment:
| Q |
186 |
tgttgaaaaattccgtctttttgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaac |
285 |
Q |
| |
|
|||| |||||| |||| || ||||||||||||| ||||||||||| | ||||| |||| |||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
2432951 |
tgttaaaaaataccgttttgttgatggtgttcttgttaatagcttcttagaaatggaaaggggtcctataaaagcactgacagatgaaggaagtgaaaat |
2433050 |
T |
|
| Q |
286 |
cttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgatatggttgga |
374 |
Q |
| |
|
| |||||||||| ||||||||||||| ||||| ||| |||||| |||| ||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
2433051 |
cctcttgtgtatcctgttggacccatcatccagacaataacaagttctgacgatgatgctaatatgttggagtgtctgtcatggttgga |
2433139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 47 - 443
Target Start/End: Original strand, 1968523 - 1968919
Alignment:
| Q |
47 |
tggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggattttcttgacc-tagctc |
145 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||| | ||||||||||| |||||||||| ||||| || || ||||| ||||| | ||||| | |||||| |
|
|
| T |
1968523 |
tggatgaggaaacatcatgtgagtatagagatataccagagcctataaaaataccaggctgtgtaccaatccatggcagggatct-cttgagcgtagctc |
1968621 |
T |
|
| Q |
146 |
aagatagatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttctaattaatagcttcctggaaattgaaaa |
245 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||| | | || || || || || |||||||||| | ||||||||||||||||| | || | |
|
|
| T |
1968622 |
aagatagatcaagtcaagtttacaaacacttcctcccactttttaaacttttaagttttgctgatggtgtttttgttaatagcttcctggaattggagat |
1968721 |
T |
|
| Q |
246 |
gggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgct |
345 |
Q |
| |
|
||| |||||| ||||||| ||| || |||||||| |||| || |||||| |||||||||| |||||||||||| ||||| || |||||||||||| |
|
|
| T |
1968722 |
gggacctataagtgcaatgaaagaggagggaagtgacaaccctccagtgtatcctgttggaccaattatccaaacagaaacaagttcaggtgatgatgct |
1968821 |
T |
|
| Q |
346 |
aataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacactttcgcaagaacaaat |
443 |
Q |
| |
|
||| || ||||||||| |||||||| ||||| | ||||| |||||||||||||| ||||| || |||||||| |||||||| || |||||||| |
|
|
| T |
1968822 |
aatggcttggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaat |
1968919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 443
Target Start/End: Complemental strand, 2004952 - 2004716
Alignment:
| Q |
207 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
306 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| || | |||||||||| ||||||| ||| |||||||||||||||| || ||||||| |||||||| |
|
|
| T |
2004952 |
tgatggtgttcttgttaatagcttcctagaaatggagatgggtcctataagtgcaatgaaagatgaaggaagtgaaaaccctcctgtgtatcctgttgga |
2004853 |
T |
|
| Q |
307 |
cccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgttt |
406 |
Q |
| |
|
||||| |||| || || || || ||||||| | | || ||| || ||||| | ||||||||| ||||| | |||||||||||||||||||| | |
|
|
| T |
2004852 |
cccatcatcccgacgatagaaagttccggtgatgctaatcatgggttggaatgtctaacatggttggataaacagcaaccttgttcagttttgtatgtgt |
2004753 |
T |
|
| Q |
407 |
cttttggtagtggtggcacactttcgcaagaacaaat |
443 |
Q |
| |
|
||||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
2004752 |
cttttgggagtggcggtacactttcacaagaacaaat |
2004716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 207 - 443
Target Start/End: Original strand, 1964747 - 1964983
Alignment:
| Q |
207 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
306 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| |||| ||| |||||| ||||| |||||| |||||||||| |||| | ||||||| |||||||| |
|
|
| T |
1964747 |
tgatggtgttcttgttaatagcttcttagaaatggaaatgggacctataaaagcaccgacagaggaaggaagtggcaacccttctgtgtatcctgttgga |
1964846 |
T |
|
| Q |
307 |
cccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgttt |
406 |
Q |
| |
|
||||| ||| | ||| ||||| |||| |||||||||| || ||||||||| |||||| |||||||||| ||||||||||||||||||| | |
|
|
| T |
1964847 |
cccatcatcgatacagtaacatgttctgaccgtgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgt |
1964946 |
T |
|
| Q |
407 |
cttttggtagtggtggcacactttcgcaagaacaaat |
443 |
Q |
| |
|
|||| || |||||||| |||||||| || |||||||| |
|
|
| T |
1964947 |
ctttcgggagtggtggtacactttcacacgaacaaat |
1964983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 2005129 - 2004989
Alignment:
| Q |
30 |
cttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggat |
129 |
Q |
| |
|
|||| |||||| ||||||||| | ||||| ||||||||||| ||||| | |||| |||||| |||||||||||||||| || || ||||| |||| |
|
|
| T |
2005129 |
cttctatttgcctaagttggatgaagaaacatcatgtgagtatggagatataccagtgcctataaaaataccaggttgtgtaccaatccatggcaggga- |
2005031 |
T |
|
| Q |
130 |
tttcttga-cctagctcaagatagatcaagtcaatcttacaa |
170 |
Q |
| |
|
| || ||| || | |||||||||| ||||||||| ||||||| |
|
|
| T |
2005030 |
tctcatgagcccaactcaagataggtcaagtcaagcttacaa |
2004989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 29 - 443
Target Start/End: Original strand, 5902084 - 5902492
Alignment:
| Q |
29 |
acttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcggga |
128 |
Q |
| |
|
||||| |||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||| || |||| ||||||||| |
|
|
| T |
5902084 |
acttctatttgctcaaattggataaggaaacatcatgtgagtacagagatctgccagaacctattcaagcaccaggttgtgtaccaattcgtggtcggga |
5902183 |
T |
|
| Q |
129 |
ttttcttgacctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttctaattaatagc |
228 |
Q |
| |
|
| | ||| || ||||||||||||||| || ||||||||||| ||||| |||||| || || ||| |||| || | ||||||| | || ||||||||| |
|
|
| T |
5902184 |
tctcgttgcccaagctcaagatagatcgagccaatcttacaaattcttactccaacgtattaaaagattctgttctgttgatggcatacttattaatagc |
5902283 |
T |
|
| Q |
229 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
328 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||| | |||||| || |||||||||||||||||||| |||| |
|
|
| T |
5902284 |
ttcctggaaattgaaaaaggtcctatagaagcactgacagaagaaggaagtggtaaccctgctgtgtaccctattggacccattatccaaacaagaacag |
5902383 |
T |
|
| Q |
329 |
catctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
428 |
Q |
| |
|
||||||| || ||| || | |||||||||| |||||| | ||||||| ||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
5902384 |
aatctggtaataatggta------tggagtgtctgacatggttacataaacaacaaccttgttcagttttgtatgtttcttttggaagtggtggtgcact |
5902477 |
T |
|
| Q |
429 |
ttcgcaagaacaaat |
443 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
5902478 |
ttcacaagaacaaat |
5902492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 442
Target Start/End: Original strand, 5905888 - 5905975
Alignment:
| Q |
355 |
gagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacactttcgcaagaacaaa |
442 |
Q |
| |
|
|||||| ||| |||||| || ||||| | ||||||||||||||||||||||||||||| || ||||| ||||||| |||||||||| |
|
|
| T |
5905888 |
gagtgtttgacatggttagataaacagcagccttgttcagttttgtatgtttcttttggaagcggtggtgcactttcacaagaacaaa |
5905975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 22055 - 22096
Alignment:
| Q |
390 |
ttcagttttgtatgtttcttttggtagtggtggcacactttc |
431 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
22055 |
ttcagttttgtatgtttcttttggaagtggtggaacactttc |
22096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 431
Target Start/End: Original strand, 2805 - 2842
Alignment:
| Q |
394 |
gttttgtatgtttcttttggtagtggtggcacactttc |
431 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
2805 |
gttttgtatgtttcttttggaagtggtggaacactttc |
2842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 431
Target Start/End: Original strand, 57348 - 57385
Alignment:
| Q |
394 |
gttttgtatgtttcttttggtagtggtggcacactttc |
431 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
57348 |
gttttgtatgtttcttttggaagtggtggaacactttc |
57385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 431
Target Start/End: Complemental strand, 15496 - 15459
Alignment:
| Q |
394 |
gttttgtatgtttcttttggtagtggtggcacactttc |
431 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
15496 |
gttttgtatgtttcttttggaagtggtggaacactttc |
15459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 18189870 - 18189931
Alignment:
| Q |
30 |
cttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagccta |
91 |
Q |
| |
|
|||| |||||| ||||||||| ||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
18189870 |
cttctatttgcctaagttggatgaggaaacaacatgtgagtacagaaatctaccagagccta |
18189931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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