View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15652_high_3 (Length: 435)
Name: NF15652_high_3
Description: NF15652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15652_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 32 - 408
Target Start/End: Complemental strand, 35410092 - 35409716
Alignment:
| Q |
32 |
ccagatgccactcagccacatggcattagactacttactgaagattatccttatgcggctgatggactccccatatggactggtatagagaagttggtca |
131 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||| |
|
|
| T |
35410092 |
ccagatgccactcggccacatggcattagactacttattgaagattatccttatgcggctgatggactcctcatatggtctagtatagagaagttggtca |
35409993 |
T |
|
| Q |
132 |
ggacctatgtgaaccattactacaaagatttgaatgccgtttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctga |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409992 |
ggacctatgtgaaccattactacaaagatttgaatgccatttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctga |
35409893 |
T |
|
| Q |
232 |
tcataaaaatgctacctggtggcctaaactaaacacccctgaggatctcatctccttgcttaccaccattatctggactgtatcagcgcaacatgctgtc |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409892 |
tcataaaaatgctacctggtggcctaaactaaacacccctgaggatctcatctccttgcttaccaccattatctggactgtatcagcgcaacatgctgtc |
35409793 |
T |
|
| Q |
332 |
ttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaattaatgcgaaaattaattcctaatga |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409792 |
ttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaattaatgcgaaaattaattcctaatga |
35409716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University