View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15652_low_1 (Length: 803)
Name: NF15652_low_1
Description: NF15652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15652_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 6400699 - 6401111
Alignment:
| Q |
1 |
aaggcatatcagtattgcatacatgtgactgggatcaaacatatatggcatatgctnnnnnnnnngattagaaggtgagccatgaaacgaaaaaatccta |
100 |
Q |
| |
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| T |
6400699 |
aaggcatatcagtattgcatacatgtgactgggatcatacatatatggcatatgctaaaaacaa-gattagaaggtgagccatgaaacgaaaaaatccta |
6400797 |
T |
|
| Q |
101 |
gacctttcaactacacatgcatgcacnnnnnnnnnn-----ccttctttagttagacaacaattcaaga---taaaatactaactaactaaacatgcact |
192 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
6400798 |
gacctttcaactacacatgcatgcacaaaaaaaaaaaaaaaccttctttagttagacaacaattcaagaagataaaatacgaactaactaaacatgcact |
6400897 |
T |
|
| Q |
193 |
acatgtcatgtattcataagttcaacataatcttctttgattaccaagggcgcacgttctgtaagttatataaatataagactgactaagatttaaagag |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||| |
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| T |
6400898 |
acatgtcatgtattcataagttcaacataatcttctttgattaccaagggcgcacgttccgtt-gttatataaatataagactgactaatatttaaagag |
6400996 |
T |
|
| Q |
293 |
aagttgtatatggatatacaatcgacatattctgttatgataaaaggaaaaaagttacaaatttcacagagaaataaacctacataactatcagctatca |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6400997 |
aagttgtatatggatatacaatcgacatattctgttatgacaaaaggaaaaaagttacaaatttcacagagaaataaacctacataactatcagttatca |
6401096 |
T |
|
| Q |
393 |
aacttcgggtgattt |
407 |
Q |
| |
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|||||||||| |||| |
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| T |
6401097 |
aacttcgggtaattt |
6401111 |
T |
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Back To:
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Target: chr6 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 435 - 680
Target Start/End: Original strand, 4966937 - 4967182
Alignment:
| Q |
435 |
tttatgaatgatatttttgataaacaa-ctcatttcagctctagaaaaacctgagctacataatgtcaccgaggttcctgaagtccttgaattgcctaat |
533 |
Q |
| |
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||||||||||||||||||| |||| || || |||| | ||||| ||| |||| ||||||| || || ||||| || || | ||||| ||||| ||||| |
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| T |
4966937 |
tttatgaatgatatttttggtaaaaaaacttatttaaactctaaaaagacctaagctacagaaagtgtccgagtttgcttagttccttaaattgtctaat |
4967036 |
T |
|
| Q |
534 |
gcacctgaaattccctaaagctagtgtaacaagtactcctcaagtttgaactacacctttcatttcattatctcaggtcatagttttctgctatctaatg |
633 |
Q |
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| || | ||||||| |||||| | || |||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||| |
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| T |
4967037 |
gtacataaaattcc-taaagccaatgaaacaagtactcctcaagtttgaactacatctttcattacattggctcaggtcatggttttctgctatctaatg |
4967135 |
T |
|
| Q |
634 |
catgctctttgaaaggtgtgatatgatttatattaattttcaatttt |
680 |
Q |
| |
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||||||||| || ||||| |||||||||||||||| |||||||||| |
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|
| T |
4967136 |
catgctcttcgatgggtgtcatatgatttatattaactttcaatttt |
4967182 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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