View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15653_high_2 (Length: 475)
Name: NF15653_high_2
Description: NF15653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15653_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 171 - 457
Target Start/End: Complemental strand, 9358457 - 9358171
Alignment:
| Q |
171 |
caaacatcatactgtttaagatgtaacaaatttaccagtcnnnnnnncaaaataataaatttaagaacttttaaaccatataatggaagactaattaata |
270 |
Q |
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| T |
9358457 |
caaacttcatactgtttaagatgtaacaaatttaccagtgaaaaaaacaaaataataaatttaagaacttttaaaccatataatggaagactaattaata |
9358358 |
T |
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| Q |
271 |
ccttgcttgattatagtatttcagacgggataagcaattcactaacttcaactttctttggtttactctcatggccactttaagtcttctttttctaatt |
370 |
Q |
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| T |
9358357 |
ccttgcttgattatagtatttctgacgggataagcaattcactaacttcaattttctttggtttactctcatggccactctaagtcttctttttctaatt |
9358258 |
T |
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| Q |
371 |
ctgcacactgatagactaacatcctttacatcttcaggttcttccaaatccaatacaatatggtcattacacgcatccatgtcactc |
457 |
Q |
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| T |
9358257 |
ctgcatactgatagactaacatcctttacatcttcaggttcttccaaatccaagacaatatggtcattacatgcatccatgtcactc |
9358171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 9358622 - 9358506
Alignment:
| Q |
1 |
tactattaaattaatatatgtgataataattttttaatctagtcttatttaaatattttgggttcagtgaagaatcatatataaaatagggtttttatga |
100 |
Q |
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| T |
9358622 |
tactattaaattaatatatgtgataataattttttaatctagtcttatttaaatattttgggttcagtgaagaatca--tataaaatagggtttttatga |
9358525 |
T |
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| Q |
101 |
tactttgattacggatttg |
119 |
Q |
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| T |
9358524 |
tactttgtttacggatttg |
9358506 |
T |
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