View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15653_high_3 (Length: 349)
Name: NF15653_high_3
Description: NF15653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15653_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 30878363 - 30878017
Alignment:
| Q |
1 |
ctcgactcacttatattttttcatatactagtaaaatataata-------tagagaagtttaaggataatttaaatgattttagtatggatatgatcctc |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30878363 |
ctcgactcacttatattttttcatatactagtaaaatataatacgtttaatagagaagtttaaggataatttaaatgattttagtatggatatgatcctc |
30878264 |
T |
|
| Q |
94 |
tcacatggatttatagtggattgtgtgacgattttattgaactaaacttaaaaattattattaatatttgattctatatgattgtagtatgcataaacta |
193 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30878263 |
tcacctggatttatagtggattgtgtgacgattttattgaactaaaattaaaaattattattaatatttgattctatatgattctagtatgcataaacta |
30878164 |
T |
|
| Q |
194 |
ttgaaatcaagcaaatttttcaacattttacatgtaaagaaagtaccaaggccacaccttacatcttattggtacaagaacttctccaatataaaaaggt |
293 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30878163 |
ttgaaatcaagcaaatttttcaacattttacaagtaaagaaagtaccaaggccacaccttacatcttattggtacaagaacttctccaatataaaaaggt |
30878064 |
T |
|
| Q |
294 |
gtgtattccataacagttccttcacttccttagccatcatcatcatc |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30878063 |
gtgtattccataacagttccttcacttccttagccatcatcatcatc |
30878017 |
T |
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