View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15653_low_10 (Length: 211)

Name: NF15653_low_10
Description: NF15653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15653_low_10
NF15653_low_10
[»] chr4 (8 HSPs)
chr4 (29-118)||(2533369-2533458)
chr4 (23-109)||(2518220-2518306)
chr4 (23-108)||(2490237-2490322)
chr4 (110-194)||(2489982-2490066)
chr4 (23-76)||(2476762-2476815)
chr4 (110-194)||(2524809-2524893)
chr4 (49-109)||(2525055-2525115)
chr4 (41-72)||(2462636-2462667)
[»] chr6 (1 HSPs)
chr6 (23-75)||(8285959-8286011)


Alignment Details
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 2533458 - 2533369
Alignment:
Q  29 tgtaaagctttcatttgaaagcttataaatgaaagttgtatgactcctctgtccacattttttattgtccagaaggaaaaataaatcgtg 118  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||||    
T  2533458 tgtaaaggtttcatttgaaagcttttaaatgaaagttgtatgactcttctgtccacaatctttattgtccagcaggaaaaataaatcgtg 2533369  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 2518306 - 2518220
Alignment:
Q  23 aagagatgtaaagctttcatttgaaagcttataaatgaaagttgtatgactcctctgtccacattttttattgtccagaaggaaaaa 109  Q
    ||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||    
T  2518306 aagagatataaaggtttcatttgaaagcttataaattaaagttgtatgactcctctgtccatattctttattgtccagcaggaaaaa 2518220  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 2490322 - 2490237
Alignment:
Q  23 aagagatgtaaagctttcatttgaaagcttataaatgaaagttgtatgactcctctgtccacattttttattgtccagaaggaaaa 108  Q
    ||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||| |||||||    
T  2490322 aagagatgtgaaggtttcatttgaaagcttataaataaaatttgtatgactcctctgtccacattctttattgtccagcaggaaaa 2490237  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 2490066 - 2489982
Alignment:
Q  110 taaatcgtgctccttatatgctatacagaattcaagttcaagtttattataaacatgaatgcatatgacgaggattggtttattt 194  Q
    |||||||||||||||||| || | ||||||||| ||||||||||||| | |||||||||| ||| ||||||||||||||||||||    
T  2490066 taaatcgtgctccttataggcaaaacagaattcgagttcaagtttataacaaacatgaatacatttgacgaggattggtttattt 2489982  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 2476815 - 2476762
Alignment:
Q  23 aagagatgtaaagctttcatttgaaagcttataaatgaaagttgtatgactcct 76  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  2476815 aagagatgtaaagttttcatttgaaagcttataaatcaaagttgtatgactcct 2476762  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 2524893 - 2524809
Alignment:
Q  110 taaatcgtgctccttatatgctatacagaattcaagttcaagtttattataaacatgaatgcatatgacgaggattggtttattt 194  Q
    ||||||||||||||||||||  | ||||||||||| ||| ||||||| | |||||||||||||| ||||||||||  ||||||||    
T  2524893 taaatcgtgctccttatatggaaaacagaattcaaattctagtttataacaaacatgaatgcatttgacgaggatccgtttattt 2524809  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 2525115 - 2525055
Alignment:
Q  49 gcttataaatgaaagttgtatgactcctctgtccacattttttattgtccagaaggaaaaa 109  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||| || |||||    
T  2525115 gcttataaatgaaagttgtatgactcctatgtccacattctttattgtccagcagcaaaaa 2525055  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 72
Target Start/End: Complemental strand, 2462667 - 2462636
Alignment:
Q  41 atttgaaagcttataaatgaaagttgtatgac 72  Q
    ||||||||||||||||||||||||||||||||    
T  2462667 atttgaaagcttataaatgaaagttgtatgac 2462636  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 8285959 - 8286011
Alignment:
Q  23 aagagatgtaaagctttcatttgaaagcttataaatgaaagttgtatgactcc 75  Q
    ||||||||| ||  |||||||||||||||||||||| ||| ||| ||||||||    
T  8285959 aagagatgtgaacttttcatttgaaagcttataaattaaaattgcatgactcc 8286011  T

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