View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15653_low_5 (Length: 278)
Name: NF15653_low_5
Description: NF15653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15653_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 46998575 - 46998849
Alignment:
| Q |
1 |
gccactttcacccatgtcagtgttgatggaaaccccaaaatccgacacattcgtctatcttctacaatccgctatcaaatccagagacactgtcacagga |
100 |
Q |
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| T |
46998575 |
gccactttcacccatgtcagtgttgatggaaaccccaaaatccgacacattcgtctatcttctacaatccgctatcaaatccagagacactgtcacagga |
46998674 |
T |
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| Q |
101 |
agattcattcacgctcgaatcatcaaacacggtcttcacctcagcgttttcttgatgaacaatcttctaaatttctactcaaaaaccgcctctttcaacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46998675 |
agattcattcacgctcgaatcatcaaacacggtcttcacctcagcgttttcttgatgaacaatcttctaaatttctactcaaaaaccgcctctttcaacg |
46998774 |
T |
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| Q |
201 |
atgcacaccgtctattctctgaaatgccacaaagaactacattctcttggaacacccttctctcttcctatgcta |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46998775 |
atgcacaccgtctattctctgaaatgccacaaagaactacattctcttggaacacccttctctcatcctatgcta |
46998849 |
T |
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