View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15653_low_7 (Length: 258)
Name: NF15653_low_7
Description: NF15653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15653_low_7 |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: scaffold0105 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 17287 - 17056
Alignment:
| Q |
17 |
atgttattgtgttgttacacttatttacagaacaaattaataagttgggatgattaatgcaattactagcaagtgcaagttcaattctagctacaagagc |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17287 |
atgttattgtgttgttacacttacttacagaacaaattaataagttgggatgattaatgcaattactagcaagtgcaagttcaattctagctacaagagc |
17188 |
T |
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| Q |
117 |
aaatacttcaccgatcaatgccatatctttgtgagaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgacttt |
216 |
Q |
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| T |
17187 |
aaatacttcaccgatcaatgccatatctttatgagaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgacttt |
17088 |
T |
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| Q |
217 |
gaaaatccattttacatttttcttcttctgtg |
248 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
17087 |
gaaaatccattttacatttttcttcttctgtg |
17056 |
T |
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Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 8190712 - 8190481
Alignment:
| Q |
17 |
atgttattgtgttgttacacttatttacagaacaaattaataagttgggatgattaatgcaattactagcaagtgcaagttcaattctagctacaagagc |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8190712 |
atgttattgtgttgttacacttacttacagaacaaattaataagttgggatgattaatgcaattactagcaagtgcaagttcaattctagctacaagagc |
8190613 |
T |
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| Q |
117 |
aaatacttcaccgatcaatgccatatctttgtgagaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgacttt |
216 |
Q |
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| T |
8190612 |
aaatacttcaccgatcaatgccatatctttatgagaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgacttt |
8190513 |
T |
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| Q |
217 |
gaaaatccattttacatttttcttcttctgtg |
248 |
Q |
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| T |
8190512 |
gaaaatccattttacatttttcttcttctgtg |
8190481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 8169722 - 8169805
Alignment:
| Q |
151 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacatt |
234 |
Q |
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| T |
8169722 |
gaagcctctagctactagtcttgctttgtgctttgaaaatgtgtcatttggattcaatttgactttgaaaatccatttcacatt |
8169805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 1182180 - 1182098
Alignment:
| Q |
151 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
233 |
Q |
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||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
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| T |
1182180 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
1182098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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