View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15654_high_4 (Length: 246)
Name: NF15654_high_4
Description: NF15654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15654_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2521443 - 2521221
Alignment:
| Q |
1 |
ctttcagaattgaaaatatattaatcttaaacaagtcataaacattattgacttccattttctctccaaaaataattattgacttccattttaaaaaa-c |
99 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
2521443 |
ctttcagaattaaaaatatattaatcttaaacaagtcataaacattattgacttccattttctctccaaaaaaaattattgacttccattttaaaaaaac |
2521344 |
T |
|
| Q |
100 |
tatttacttccatttatatatatgatattgacttccataaactaggttgacttcaagaaggaaaaaagtaatagaattcaagaagga-aaaagcaatata |
198 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2521343 |
tatttacttccatttatatatatgatagtgacttccataaactaggttgacttcaagaaggaaaaaagtaatagaattcaagaaggaaaaaagcaatata |
2521244 |
T |
|
| Q |
199 |
attaatagagaatatgctttaac |
221 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2521243 |
attaatagagaatatgctttaac |
2521221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University