View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15654_low_2 (Length: 382)
Name: NF15654_low_2
Description: NF15654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15654_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 154358 - 154145
Alignment:
| Q |
12 |
agagaaggttatcataaaataaatatacaaatatcatttctctttaacaaatgtctcnnnnnnnaagttgagccatcattgatgaaaagtaagtgcattt |
111 |
Q |
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| T |
154358 |
agagaaggttatcataaaatgaatatacaaatatcatttctctttaacaaatgtctctttttttaagttgagccatcattgatgaaaagtaagtgcattt |
154259 |
T |
|
| Q |
112 |
gtgcctgaaatatctgtttccacaattgcatgttttgtttttattcattttctgcgatctcactctatttctgctctacactgagtgcaactattttgca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
154258 |
gtgcctgaaatatctgtttccacaattgcatgttttgtttttattcattttctgcgatctcactctatttctgctctacactgagtgcaactattttgca |
154159 |
T |
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| Q |
212 |
gataatttgaaaag |
225 |
Q |
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|||||||||||||| |
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| T |
154158 |
gataatttgaaaag |
154145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 154080 - 154000
Alignment:
| Q |
290 |
gttacgttccat--atcggcaaataattcaatttacacataatattttatgtttcgattatcttttgcccgtgtagttttt |
368 |
Q |
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| T |
154080 |
gttacgttccatcgatcggcaaataattcaatttacacataatattttatgtttcgattatcttttgcccgtgtagttttt |
154000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 7990112 - 7990070
Alignment:
| Q |
20 |
ttatcataaaataaatatacaaatatcatttctctttaacaaa |
62 |
Q |
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| T |
7990112 |
ttatcataaaatagatgtacaaatatcatttctcttaaacaaa |
7990070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 20096458 - 20096492
Alignment:
| Q |
20 |
ttatcataaaataaatatacaaatatcatttctct |
54 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
20096458 |
ttatcataaaataattatacaaatatcatttctct |
20096492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 44170554 - 44170510
Alignment:
| Q |
19 |
gttatcataaaataaatatacaaatatcatttctctttaacaaat |
63 |
Q |
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| T |
44170554 |
gttatcattaaatagatatacaaatatcattgctcttttacaaat |
44170510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 54591750 - 54591786
Alignment:
| Q |
20 |
ttatcataaaataaatatacaaatatcatttctcttt |
56 |
Q |
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|||||| ||||||| |||||||||||||||||||||| |
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| T |
54591750 |
ttatcacaaaataattatacaaatatcatttctcttt |
54591786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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