View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_high_11 (Length: 526)
Name: NF15655_high_11
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 198 - 510
Target Start/End: Complemental strand, 1139842 - 1139516
Alignment:
| Q |
198 |
tatgccaattttgtaggttattttttcattctagattagtttcttttcacaaattattgtggttctatttatctttttgtagtttaatgttctgttatat |
297 |
Q |
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| T |
1139842 |
tatgccaattttgtaggttattttttcattctaaattagtttcttttcacaaattattgtggttctatttatctttttgtagtttaatgatctgtttttt |
1139743 |
T |
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| Q |
298 |
attct---tcaattatat-----------atatacgattaacaatttcaaaattggtatgaatcttcattgtcatttgggattctcttttgaattttaag |
383 |
Q |
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| T |
1139742 |
tttctctttctgttatattttcttcaattatatacgattaacaatttcaaaattgatatgaatcttcattgtcatttgagattttcttttgaattttaag |
1139643 |
T |
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| Q |
384 |
atgattttattcatatcacaaataattaaacctaaccttgcattgatgcaataatatataactttatcgacaattttaacacctttggtttagtttagaa |
483 |
Q |
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| T |
1139642 |
attattttattcatatcacaaataattaaacctaaccttgcattgatgcaataatatataaatttatcgacaattttaacacctttggtttagtttagaa |
1139543 |
T |
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| Q |
484 |
gagtctaaatatcagtcacgtgtttta |
510 |
Q |
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| T |
1139542 |
gagtataaatatgagtcacgtgtttta |
1139516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 1140399 - 1140352
Alignment:
| Q |
11 |
cataggtagcatggattcacgagggcaaaaacaggaattaacaggaaa |
58 |
Q |
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| T |
1140399 |
cataggtagcatggattcacgagggcaaaaacaggaattaacaggaaa |
1140352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 1139955 - 1139927
Alignment:
| Q |
81 |
aagagtgaaggcattaacgtgagtatggg |
109 |
Q |
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| T |
1139955 |
aagagtgaaggcattaacgtgagtatggg |
1139927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 1140272 - 1140240
Alignment:
| Q |
55 |
gaaaagaaaccgtccattaaatcgtcaagagtg |
87 |
Q |
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| T |
1140272 |
gaaaagaaaccgtccattaaatcgtgaagagtg |
1140240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 32618034 - 32617991
Alignment:
| Q |
364 |
attctcttttgaattttaagatgattttattcatatcacaaata |
407 |
Q |
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| T |
32618034 |
attctcttttgaattttaagatgattatatttagatcacaaata |
32617991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 474
Target Start/End: Original strand, 14604880 - 14604988
Alignment:
| Q |
364 |
attctcttttgaattttaagatgattttattcatatcacaaataattaaacctaaccttgcattgatgcaataatatataacttta--tcgacaatttta |
461 |
Q |
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|||||||||||||||||||||||||| |||| | ||||||| || |||| ||||| ||||||||| || |||| ||||||| || | ||||| | |
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| T |
14604880 |
attctcttttgaattttaagatgattatatttagatcacaagtag----acctcaccttccattgatgctatgatatttaacttttactctataatttga |
14604975 |
T |
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| Q |
462 |
acacctttggttt |
474 |
Q |
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| T |
14604976 |
acacctttggttt |
14604988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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