View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15655_high_12 (Length: 488)

Name: NF15655_high_12
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15655_high_12
NF15655_high_12
[»] chr1 (6 HSPs)
chr1 (49-471)||(47781501-47781923)
chr1 (44-471)||(47787710-47788137)
chr1 (283-471)||(47811261-47811449)
chr1 (395-444)||(47760265-47760314)
chr1 (16-53)||(41885048-41885085)
chr1 (75-103)||(47811063-47811091)
[»] chr8 (3 HSPs)
chr8 (16-50)||(36091724-36091758)
chr8 (16-50)||(37120805-37120839)
chr8 (15-47)||(16037489-16037521)
[»] chr7 (2 HSPs)
chr7 (16-50)||(7238442-7238476)
chr7 (17-47)||(20544205-20544235)
[»] chr5 (2 HSPs)
chr5 (16-46)||(6987540-6987570)
chr5 (16-45)||(39741357-39741386)
[»] chr2 (5 HSPs)
chr2 (16-46)||(29134528-29134558)
chr2 (16-45)||(10362525-10362554)
chr2 (16-45)||(29809125-29809154)
chr2 (16-57)||(37593229-37593270)
chr2 (16-48)||(39120565-39120597)
[»] scaffold0063 (1 HSPs)
scaffold0063 (16-48)||(52128-52160)
[»] chr3 (1 HSPs)
chr3 (16-48)||(26704184-26704216)


Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 49 - 471
Target Start/End: Original strand, 47781501 - 47781923
Alignment:
Q  49 aattgcaaattatattaaacaaggccaagaaaggacacttcatctttgcctataacagtccattaatatgtcaaaacattcgatcatccgactaactgtt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  47781501 aattgcaaattatattaaacaaggccaagaaaggacacttcatctttgcctgtaacagtccattcatatgtcaaaacattcgatcatccgactaactgtt 47781600  T
Q  149 tccttaggtacaatcaatatgtctattctctctttaagcccacttctctttctctttctcgtaattatccttttcacatctaaagctcaagcatacaaaa 248  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47781601 tccttaagtacaatcaatatgtctactctctctttaagcccacttctctttttctttctcgtaattatccttttcacatctaaagctcaagcatacaaaa 47781700  T
Q  249 acgaccaaaaattccactacttttgcgaccaacgtaacgatagaggtgactacataaccggtagtacctaccacaacaacctcaaaatcgcttttatcta 348  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47781701 actaccgaaaattccactacttttgcgaccaacgtaacgatagaggtgactacataaccggtagtacctaccacaacaacctcaaaatcgcttttatcta 47781800  T
Q  349 cctcactttcaactcaaaaattgactacggtttctacaacaccaactatggccaaaacaatgacaaagtaaacgtcattggaatatgtagaggagacatt 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47781801 cctcactttcaactcaaaaattgactacggtttctacaacaccaactatggccaaaacaatgacaaagtaaacgtcattggaatatgtagaggagacatt 47781900  T
Q  449 aatcctcaagactgtcgcaaatg 471  Q
    |||||||||||||||||||||||    
T  47781901 aatcctcaagactgtcgcaaatg 47781923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 44 - 471
Target Start/End: Original strand, 47787710 - 47788137
Alignment:
Q  44 aaaagaattgcaaattatattaaacaaggccaagaaaggacacttcatctttgcctataacagtccattaatatgtcaaaacattcgatcatccgactaa 143  Q
    |||| ||||||||||||||||||||| |||||||||  || ||||||||||||||||||| ||  |||| ||||||| |||| ||| |||||||||||||    
T  47787710 aaaaaaattgcaaattatattaaacatggccaagaatagaaacttcatctttgcctataaaagctcattcatatgtctaaaccttcaatcatccgactaa 47787809  T
Q  144 ctgtttccttaggtacaatcaatatgtctattctctctttaagcccacttctctttctctttctcgtaattatccttttcacatctaaagctcaagcata 243  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||  ||||| |    
T  47787810 ttgtttccttaagtacaatcaatatgtctattctctctttaagcccactttcctttctctttctcataattatccttttcacatctaaagccaaagcaga 47787909  T
Q  244 caaaaacgaccaaaaattccactacttttgcgaccaacgtaacgatagaggtgactacataaccggtagtacctaccacaacaacctcaaaatcgctttt 343  Q
    ||| |||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||| |     
T  47787910 caacaacgaccaaaaattccactacttttgcgaccaaaataacgatagaggtaactacataaccggtagtgcctacgacaacaacctcaaattcgctatc 47788009  T
Q  344 atctacctcactttcaactcaaaaattgactacggtttctacaacaccaactatggccaaaacaatgacaaagtaaacgtcattggaatatgtagaggag 443  Q
    ||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  47788010 atgcacctcacttacaactcaaaaattgactacggtttctacaacaccaactatggccaaaacaatgacacagtaaacgccattggaatatgtagaggag 47788109  T
Q  444 acattaatcctcaagactgtcgcaaatg 471  Q
    |||||||||||||||| |||||||||||    
T  47788110 acattaatcctcaagattgtcgcaaatg 47788137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 283 - 471
Target Start/End: Original strand, 47811261 - 47811449
Alignment:
Q  283 taacgatagaggtgactacataaccggtagtacctaccacaacaacctcaaaatcgcttttatctacctcactttcaactcaaaaattgactacggtttc 382  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| || |||||||||||    
T  47811261 taacgatagaggcgactacataaccggtagtacctaccataacaacctcaaaatcgctttcatatacctcactttcaactcaaaagttaactacggtttc 47811360  T
Q  383 tacaacaccaactatggccaaaacaatgacaaagtaaacgtcattggaatatgtagaggagacattaatcctcaagactgtcgcaaatg 471  Q
    ||||| || || || ||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||    
T  47811361 tacaatacaaattacggccaaaacgaggacaaagtaaacctcattggaatatgtagaggagacattaatcctgaagattgtcgcaaatg 47811449  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 47760314 - 47760265
Alignment:
Q  395 tatggccaaaacaatgacaaagtaaacgtcattggaatatgtagaggaga 444  Q
    ||||||||||||| |||||||||||||| ||||||| | |||||||||||    
T  47760314 tatggccaaaacactgacaaagtaaacgccattggactctgtagaggaga 47760265  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 41885085 - 41885048
Alignment:
Q  16 atagggaccaaaaacatatttaaccataaaaagaattg 53  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  41885085 atagggaccaaaaacatatttaaccctaaaaacaattg 41885048  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 47811063 - 47811091
Alignment:
Q  75 aagaaaggacacttcatctttgcctataa 103  Q
    |||||||||||||||||||||||||||||    
T  47811063 aagaaaggacacttcatctttgcctataa 47811091  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 36091724 - 36091758
Alignment:
Q  16 atagggaccaaaaacatatttaaccataaaaagaa 50  Q
    ||||||||||||||||||||||||| |||||||||    
T  36091724 atagggaccaaaaacatatttaaccctaaaaagaa 36091758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 37120805 - 37120839
Alignment:
Q  16 atagggaccaaaaacatatttaaccataaaaagaa 50  Q
    ||||||||||||||||||||||||| |||||||||    
T  37120805 atagggaccaaaaacatatttaaccctaaaaagaa 37120839  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 16037521 - 16037489
Alignment:
Q  15 catagggaccaaaaacatatttaaccataaaaa 47  Q
    ||||||||||||||||||||||||||| |||||    
T  16037521 catagggaccaaaaacatatttaaccaaaaaaa 16037489  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 7238476 - 7238442
Alignment:
Q  16 atagggaccaaaaacatatttaaccataaaaagaa 50  Q
    ||||||||||||||||||||||||| |||||||||    
T  7238476 atagggaccaaaaacatatttaaccctaaaaagaa 7238442  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 20544205 - 20544235
Alignment:
Q  17 tagggaccaaaaacatatttaaccataaaaa 47  Q
    |||||||||||||||||||||||||||||||    
T  20544205 tagggaccaaaaacatatttaaccataaaaa 20544235  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 6987570 - 6987540
Alignment:
Q  16 atagggaccaaaaacatatttaaccataaaa 46  Q
    |||||||||||||||||||||||||||||||    
T  6987570 atagggaccaaaaacatatttaaccataaaa 6987540  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 39741357 - 39741386
Alignment:
Q  16 atagggaccaaaaacatatttaaccataaa 45  Q
    ||||||||||||||||||||||||||||||    
T  39741357 atagggaccaaaaacatatttaaccataaa 39741386  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 29134528 - 29134558
Alignment:
Q  16 atagggaccaaaaacatatttaaccataaaa 46  Q
    |||||||||||||||||||||||||||||||    
T  29134528 atagggaccaaaaacatatttaaccataaaa 29134558  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 10362525 - 10362554
Alignment:
Q  16 atagggaccaaaaacatatttaaccataaa 45  Q
    ||||||||||||||||||||||||||||||    
T  10362525 atagggaccaaaaacatatttaaccataaa 10362554  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 29809154 - 29809125
Alignment:
Q  16 atagggaccaaaaacatatttaaccataaa 45  Q
    ||||||||||||||||||||||||||||||    
T  29809154 atagggaccaaaaacatatttaaccataaa 29809125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 37593229 - 37593270
Alignment:
Q  16 atagggaccaaaaacatatttaaccataaaaagaattgcaaa 57  Q
    ||||||| |||||||||||||||||||||||| |||| ||||    
T  37593229 atagggatcaaaaacatatttaaccataaaaacaattacaaa 37593270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 39120565 - 39120597
Alignment:
Q  16 atagggaccaaaaacatatttaaccataaaaag 48  Q
    ||||||||||||||||||||||||| |||||||    
T  39120565 atagggaccaaaaacatatttaaccctaaaaag 39120597  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 52128 - 52160
Alignment:
Q  16 atagggaccaaaaacatatttaaccataaaaag 48  Q
    ||||||||||||||||||||||||| |||||||    
T  52128 atagggaccaaaaacatatttaaccctaaaaag 52160  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 26704184 - 26704216
Alignment:
Q  16 atagggaccaaaaacatatttaaccataaaaag 48  Q
    ||||||||||||||||||||||||| |||||||    
T  26704184 atagggaccaaaaacatatttaaccctaaaaag 26704216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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