View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_high_15 (Length: 469)
Name: NF15655_high_15
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 177 - 450
Target Start/End: Complemental strand, 36127961 - 36127688
Alignment:
| Q |
177 |
caaagagcttgagttgatggcacatgaacaagctattgctggtgatagacaagcacatataattcaattcttgaacaaattctcgacaagtgctaattct |
276 |
Q |
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| T |
36127961 |
caaagagcttgagttgatggcacatgaacaagctattgctggtgatagacaagcacatataattcaattcttgaacaaattctcgacaagtgctaattct |
36127862 |
T |
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| Q |
277 |
tcatccctagcttcaatgtcaactcaacttcaagcttatttagcaacattaacttcaaactcttcttcttcaacattgcactcacaaaaccctaatcctg |
376 |
Q |
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| T |
36127861 |
tcatccctaacttcaatgtcaactcaacttcaagcttatttagcaacattaacttcaaactcttcttcttcaacattgcactcacaaaaccctaatcctg |
36127762 |
T |
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| Q |
377 |
aaactcttataaaaactcttcaaccaatacctgaaaaccctagctcaacccttccttcttcttctgctactttg |
450 |
Q |
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| T |
36127761 |
aaactcttaaaaaaactcttcaaccaatacctgaaaaccctagctcaacccttccttcttcttctactactttg |
36127688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 36128137 - 36128030
Alignment:
| Q |
1 |
agatcaggtgatgatagatttgaagtgtttaagggtttttgtgagagtgttgtaaagaaaatgatggatcaacaagaagaaatgcacaacaagcttattg |
100 |
Q |
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| T |
36128137 |
agatcaggtgatgatagatttgaagtgtttaagggtttttgtgagagtgttgtaaagaaaatgatggatcaacaagaagaaatgcacaacaagcttattg |
36128038 |
T |
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| Q |
101 |
aagatatg |
108 |
Q |
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| T |
36128037 |
aagatatg |
36128030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 47422275 - 47422367
Alignment:
| Q |
12 |
tgatagatttgaagtgtttaagggtttttgtgagagtgttgtaaagaaaatgatggatcaacaagaagaaatgcacaacaagcttattgaaga |
104 |
Q |
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| T |
47422275 |
tgatagatttgaaatgttgaagagtttttgtgagacagtggttaataaaataatagcacaacaagaagaaatacacaataagctacttgaaga |
47422367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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