View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_high_22 (Length: 370)
Name: NF15655_high_22
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 353
Target Start/End: Original strand, 34645544 - 34645882
Alignment:
| Q |
14 |
ttttgggatatacattcgttgtgactattttatataattgataacctttgcatgttttgaatttaatgatgacgtagcaccttgaagttaattggattat |
113 |
Q |
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| T |
34645544 |
ttttgggatatatttttgttgtgactgttt-atataattgataacctttgcatgttttggatttaatgatgacgtagcaccttgaagttaattgaattat |
34645642 |
T |
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| Q |
114 |
tgatgaattattatttaatagtgcatttggggtttcaagggtgtcacagaaaccatggacgaaattcaaatttcaccaacgaaaactataagaaaggagg |
213 |
Q |
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| T |
34645643 |
tgatgaattattatttaatattatatttggggtttcaagggtgttactgaaaccagggacgaaattcaaatttcagcaacgaaaactataagaaaggaga |
34645742 |
T |
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| Q |
214 |
aacctcgacaagatgagaggatatacaaacatatggtatggaaaatctcaaatttaatgttatgattgtcagaagtttggtcattatgcttcaaaatgta |
313 |
Q |
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| T |
34645743 |
aacctcgacaagatgagaggatattcaaacatatggtatggaaaatctcaaatttaatgttatgattgtcagaagtttggtcattatgcttcaaaatgta |
34645842 |
T |
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| Q |
314 |
gatttgccaagaatagggtcgacgagaagaccaactatgt |
353 |
Q |
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| T |
34645843 |
gatttgccaagaatagggtcgacgagaagaccaactatgt |
34645882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 19556356 - 19556302
Alignment:
| Q |
60 |
tttgcatgttttgaatttaatgatgacgtagcaccttgaagttaattggattattg |
115 |
Q |
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| T |
19556356 |
tttgcatgttttggatt-aatgatgatgtagcaccttgaagttaattgaattattg |
19556302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 32554922 - 32554848
Alignment:
| Q |
54 |
ataacctttgcatgttttgaatttaatgatgacgtagcaccttgaagttaattggattattgatgaattattattt |
129 |
Q |
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| T |
32554922 |
ataacctttgcatgttttgcatt-aatgatgacgtaacaccttgaagttaattgacttattgttgaattattattt |
32554848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 1250331 - 1250395
Alignment:
| Q |
50 |
attgataacctttgcatgttttgaatttaatgatgacgtagcaccttgaagttaattggattatt |
114 |
Q |
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| T |
1250331 |
attgataacatttgcatgttttagatttaatgatgaagtaataccttgaagttaattgaattatt |
1250395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 13384310 - 13384235
Alignment:
| Q |
57 |
acctttgcatgttttgaatttaatgatgacgtagcaccttgaagttaattggattattgatgaattattatttaata |
133 |
Q |
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| T |
13384310 |
acctttgcatgttttggatt-aatggtgaggtaacaccttgaagttaattgatttattgtcgaattattattaaata |
13384235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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