View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_high_24 (Length: 359)
Name: NF15655_high_24
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 46946307 - 46946650
Alignment:
| Q |
1 |
acatgatggataaaacgtgcgtccacggtccacatataaacatgttcaaagtcgatactcacgaaagtggagctgcaagctagctagaaatctcatggtc |
100 |
Q |
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| T |
46946307 |
acatgatggataaaacgtgcgtccacggtccacatataaacatgttcaaagtcgatactcacgaaagtggagctgcaagctag----aaatttcatggtc |
46946402 |
T |
|
| Q |
101 |
ttagaaatcatgatttttacaattttgttgcattagctattattacgtatgacagacaattctcataataagacttataaatcttatgaaacttttcttt |
200 |
Q |
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| T |
46946403 |
ttagaaatcatgatttttacaattttgttgcattagctattattacgtatgacagacaattctcataataagacttacaaatcttatgaaacttttcttt |
46946502 |
T |
|
| Q |
201 |
t--nnnnnnnncttatgagactttctattttcacacttcaaccttctcacacattctattatgaattttcatatataaaaaattgaacgtattggatggt |
298 |
Q |
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| T |
46946503 |
taaaaaaaaaacttatgagactttctattttcacacttcaaccttctcacacattctattatgaattttcatatataaaaaattgaacgtattagatggt |
46946602 |
T |
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| Q |
299 |
ttttaaatgattgtacgcttttaaaatgtataatctacactctaatat |
346 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46946603 |
ttttgaatgattgtacgcttttaaaatgtataatctacactctaatat |
46946650 |
T |
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