View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_high_4 (Length: 706)
Name: NF15655_high_4
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 648; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 1 - 691
Target Start/End: Original strand, 37117200 - 37117891
Alignment:
| Q |
1 |
caaaattttctaaatcatcagtttttattacagcttcgttatcagcagactttcttgatctgtcggccacagaggtttcaggctcagctatcacagaaca |
100 |
Q |
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| T |
37117200 |
caaaattttctaaatcatcagtttttattacagcttcgttatcagcagactttcttgatctgtcggccacagaggtttcaggctcagctatcacagaaca |
37117299 |
T |
|
| Q |
101 |
tgaattatcattgcttgaggtagtggcacctagtttatctatatcttccacttcttttttatcagcaggtaatccacccgaatgcagacactctaacaca |
200 |
Q |
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| T |
37117300 |
tgaattatcattgcttgaggtagtggcacctagtttatctatatcttccacttcttttttatcagcaggtaatccacccgaatgcagacactctaacaca |
37117399 |
T |
|
| Q |
201 |
caacgcagactatatgcatgatttgcaaattcttgtagctctccctcaaatgttgcaccctccagggtgctaagatccttgcaaagatcagcaatgctgg |
300 |
Q |
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| T |
37117400 |
caacgcagactatatgcatgatttgcaaattcttgtagctctccctcaaatgttgcaccctccagggtgctaagatccttgcaaagatcagcaatgctgg |
37117499 |
T |
|
| Q |
301 |
catgacccaatttccccgcttcgtagagtgtaacggcatgagttttcaggcctgacaaagttcaacaagtaggttgatcttgataaaacatacaaaccaa |
400 |
Q |
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| T |
37117500 |
catgacccaatttccccgcttcgtagagtgtaacggcatgagttttcaggcctgacaaagttcaacaagtaggttgatcttgataaaacatacaaaccaa |
37117599 |
T |
|
| Q |
401 |
tctcaaccaaaggacaatattgaaccctgattgttccaagtcaagcagggtagactcacttaagggaagtacctctcctaccagtacctatttttctctt |
500 |
Q |
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| T |
37117600 |
tctcaaccaaaggacaatattgaaccctgattgttccaagtcaagcagggtagactcacttaagggaagtacctctcctaccagtacctatttttctcat |
37117699 |
T |
|
| Q |
501 |
tcacaagacatcgttgaaacattgttcaagagaaaccaaacacgttaccacttcaaccaacagacatagtagattggtattttactttagcatccagaaa |
600 |
Q |
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|| || |||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37117700 |
tcgcaggacatcattgaaacattgttcaagagaaaccaagcactttaccacttcaaccaacagaaatagtagattggtattttactttagcatccagaaa |
37117799 |
T |
|
| Q |
601 |
gtccaaaaaagtgaagtgggagaaaat-gaaacctatatagatttactagcccaacacacaattattaaagttaagtttctaccttgatttt |
691 |
Q |
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| T |
37117800 |
gtccaaaaaagtgaagtgggagaaaatggaaacctatataggtttactagcccaacacataattattaaagttaagtttctaccttgatttt |
37117891 |
T |
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Target: chr3 (Bit Score: 103; Significance: 7e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 186 - 364
Target Start/End: Complemental strand, 36249512 - 36249334
Alignment:
| Q |
186 |
agacactctaacacacaacgcagactatatgcatgatttgcaaattcttgtagctctccctcaaatgttgcaccctccagggtgctaagatccttgcaaa |
285 |
Q |
| |
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||||| ||||| ||||||||||| ||| |||||||||| |||||||| || || |||||||||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
36249512 |
agacattctaatacacaacgcaggctaaatgcatgattggcaaattcctgcagttctccctcaaattttgcaccttccagagtgctaagatccttgcaaa |
36249413 |
T |
|
| Q |
286 |
gatcagcaatgctggcatgacccaatttccccgcttcgtagagtgtaacggcatgagttttcaggcctgacaaagttca |
364 |
Q |
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|||||| ||||||||||| ||||||||| |||||||| ||||||||||| ||||||| ||||| |||||||||||||| |
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| T |
36249412 |
gatcagaaatgctggcataacccaatttacccgcttcatagagtgtaacagcatgagatttcaaacctgacaaagttca |
36249334 |
T |
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