View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15655_high_48 (Length: 208)

Name: NF15655_high_48

Description: NF15655

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15655_high_48

[»] chr6 (3 HSPs)

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 3)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 91; E-Value: 3e-44

Query Start/End: Original strand, 18 - 116

Target Start/End: Complemental strand, 5166648 - 5166550

Alignment:

Q	18	gaatgatttaaatcaaaacaagccatgaagtgaaaaggaagaaacatatgtgacgttgaccgcactggtcaatagaacaacagtatataaattcatctc	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5166648	gaatgatttaaatcaaaacaagccatgaagtgacaaggaagaaacatatgttacgttgaccgcactggtcaatagaacaacagtatataaattcatctc	5166550	T

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Target: chr6; HSP #2

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 19 - 81

Target Start/End: Original strand, 5172576 - 5172638

Alignment:

Q	19	aatgatttaaatcaaaacaagccatgaagtgaaaaggaagaaacatatgtgacgttgaccgca	81	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	5172576	aatgatttaaattcaaacaagccatggagttacagggaagaagcatatgttacgttgaccgca	5172638	T

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Target: chr6; HSP #3

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 19 - 81

Target Start/End: Original strand, 5271841 - 5271903

Alignment:

Q	19	aatgatttaaatcaaaacaagccatgaagtgaaaaggaagaaacatatgtgacgttgaccgca	81	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	5271841	aatgatttaaattcaaacaagccatggagtgacggggaagaagcatatgttacgttgaccgca	5271903	T

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