View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_high_5 (Length: 655)
Name: NF15655_high_5
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 139 - 472
Target Start/End: Complemental strand, 27989018 - 27988685
Alignment:
| Q |
139 |
caaatttaaaaaacatgaagagtaaaatcactggctacttgataaataaagcttcatacatgtaccaaacatagttacatcattcattacactatgtagg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27989018 |
caaatttaaaaaacatgaagagtaaaatcactggctacttgataaataaagcttcatacatgtaccaaacatagttacatcattcattacactacgtagg |
27988919 |
T |
|
| Q |
239 |
gtaccgcgtaacaatttgtgagtaataaccaattgattcggtaactcataagaattcttcaaccatgattattcttcgaccaaacagtgaagtagtgaca |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
27988918 |
gtaccgcgtaacaatttgtgagtaataaccaattgattcggtaactcataagaattcttcaaccatgattattcttcggccaaacagtgaagtcactaca |
27988819 |
T |
|
| Q |
339 |
catatgaatcttagaatcaatttcatgagaatgaacctatnnnnnnnggaggaattattagaaacattagaaaccaatatcaaatacagaaagctcgtac |
438 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27988818 |
cataagaatcttagaatcaatttcatgagaatgaacctataaaaaaaggagaaattattagaaacattagaaaccaatatcaaatacagaaagctcgtac |
27988719 |
T |
|
| Q |
439 |
tgaaattcacaaaatgcatcaattatgaaaaccg |
472 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
27988718 |
tgaaattcacaaaatgcatcaattatgaaaaccg |
27988685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 139 - 472
Target Start/End: Complemental strand, 28075551 - 28075218
Alignment:
| Q |
139 |
caaatttaaaaaacatgaagagtaaaatcactggctacttgataaataaagcttcatacatgtaccaaacatagttacatcattcattacactatgtagg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28075551 |
caaatttaaaaaacatgaagagtaaaatcactggctacttgataaataaagcttcatacatgtaccaaacatagttacatcattcattacactacgtagg |
28075452 |
T |
|
| Q |
239 |
gtaccgcgtaacaatttgtgagtaataaccaattgattcggtaactcataagaattcttcaaccatgattattcttcgaccaaacagtgaagtagtgaca |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
28075451 |
gtaccgcgtaacaatttgtgagtaataaccaattgattcggtaactcataagaattcttcaaccatgattattcttcggccaaacagtgaagtcactaca |
28075352 |
T |
|
| Q |
339 |
catatgaatcttagaatcaatttcatgagaatgaacctatnnnnnnnggaggaattattagaaacattagaaaccaatatcaaatacagaaagctcgtac |
438 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28075351 |
cataagaatcttagaatcaatttcatgagaatgaacctataaaaaaaggagaaattattagaaacattagaaaccaatatcaaatacagaaagctcgtac |
28075252 |
T |
|
| Q |
439 |
tgaaattcacaaaatgcatcaattatgaaaaccg |
472 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
28075251 |
tgaaattcacaaaatgcatcaattatgaaaaccg |
28075218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 27990015 - 27989918
Alignment:
| Q |
18 |
attttgtatataactttgttttcttgtttgagaaaccacccgatgtgggactgttattacttgtctattttctctattgcttttaccatttcattcacg |
116 |
Q |
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||||| || |||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27990015 |
attttatagataagttagttttcttgtttgagaaaccacccgatgtgggact-ttattacttgtctattttctttattgcttttaccatttcattcacg |
27989918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 28076548 - 28076451
Alignment:
| Q |
18 |
attttgtatataactttgttttcttgtttgagaaaccacccgatgtgggactgttattacttgtctattttctctattgcttttaccatttcattcacg |
116 |
Q |
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||||| || |||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28076548 |
attttatagataagttagttttcttgtttgagaaaccacccgatgtgggact-ttattacttgtctattttctttattgcttttaccatttcattcacg |
28076451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 27994060 - 27993980
Alignment:
| Q |
35 |
gttttcttgtttgagaaaccacccgatgtgggactgttattacttgtctattttctctattgcttttaccatttcattcacg |
116 |
Q |
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|||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27994060 |
gttttcttgtttcagaaaccacccgatgtgggact-ttcttacttgtctattttctctattgattttaccatttcattcacg |
27993980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 28080593 - 28080513
Alignment:
| Q |
35 |
gttttcttgtttgagaaaccacccgatgtgggactgttattacttgtctattttctctattgcttttaccatttcattcacg |
116 |
Q |
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|||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28080593 |
gttttcttgtttcagaaaccacccgatgtgggact-ttcttacttgtctattttctctattgattttaccatttcattcacg |
28080513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 611
Target Start/End: Original strand, 17765495 - 17765552
Alignment:
| Q |
554 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
611 |
Q |
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|||||||||||||||||||| | ||| |||||||||||| |||||||||||||||| |
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| T |
17765495 |
acttttatgtatgggcatcggttgaaaattttgtattcttgtcaggaccttgttcttt |
17765552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 611
Target Start/End: Original strand, 26771519 - 26771576
Alignment:
| Q |
554 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
611 |
Q |
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||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||| |
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| T |
26771519 |
acttttatgtatgagcatcgactgaaaactttgtgttcttgacaggaccttgttcttt |
26771576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 554 - 611
Target Start/End: Complemental strand, 32536502 - 32536445
Alignment:
| Q |
554 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
611 |
Q |
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||||||||||||| |||| ||| | ||||||||||||||||| ||||||||||||||| |
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| T |
32536502 |
acttttatgtatgagcattgactgaaaactttgtattcttgataggaccttgttcttt |
32536445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 611
Target Start/End: Original strand, 15959347 - 15959404
Alignment:
| Q |
554 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
611 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||| |||||||||||| |
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| T |
15959347 |
acttttatgtatgggcatcgactaaaaactttttattcttgactaaaccttgttcttt |
15959404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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