View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15655_high_7 (Length: 603)
Name: NF15655_high_7
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 20 - 593
Target Start/End: Original strand, 4554007 - 4554597
Alignment:
| Q |
20 |
aaatgaagcatgcatttgagatttcaa-------cgatgaaagaaaatcgtgaattaaacagaagatgaatgacaaatatatagacggtaactcatgcag |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4554007 |
aaatgaagcatgcatttgagatttcaagtttcaacgatgaaagaaaatcgtgaattaaacagaagatgaatgacaaatatatagacggtagctcatgcag |
4554106 |
T |
|
| Q |
113 |
acatcgctagctaacttatagttaagcaatgtacatatatagttcatgttaccaataatgtcatgta------tatctgtata----tatagaaatatct |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
4554107 |
acatcgctagctaacttatagttaagcaatgtacatatatagttcatgttaccaataatgtcatgtacatgtatatctgtatatatatatagaaatatct |
4554206 |
T |
|
| Q |
203 |
ctgtcttccattttgtgtcaaaataatcaatacctatactatattattctttagccatgggatccaaagtaatattcatgctcttggtgctttgcattac |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4554207 |
ctgtcttccattttgtgtcaaaataatcaatacctatactatattattctttagccatgggatccaaagtaatattcatgctcttggtgctttgcattac |
4554306 |
T |
|
| Q |
303 |
agtttatggtactaacaatgatgactcgttctcaagacagaaggttttggaagttgagaaaaaattacaccatcttagaaaacactcgttaaaaaccatt |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
4554307 |
agtttatggtactaacaatgatgactcgttctcaagacagaaggttttggaagttgagaaaaaattacagcatcttagaaaacactcattaaaaaccatt |
4554406 |
T |
|
| Q |
403 |
aaggtaaaaagttttctttggtatactagacaatatcttacactgttgaatgttgtgtgagatttgatattgtttacattttctaaattgtcacacaagg |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4554407 |
aaggtaaaaagttttctttggtatactagacaatatcttacactgttgaatgttgtgttagatttgatattgtttagattttctaaattgtcacacaagg |
4554506 |
T |
|
| Q |
503 |
tgctaagcttaattataannnnnnncatgcttgtagagtgaagatggagatattatagattgcattgacattaaaaagcagcctgcctttg |
593 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4554507 |
tgctaagcttaattataatttttttcatgcttgtagagtgaagatggagatattatagattgcattgacattaaaaaacagcctgcctttg |
4554597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University