View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_high_8 (Length: 573)
Name: NF15655_high_8
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 265 - 565
Target Start/End: Original strand, 27693449 - 27693754
Alignment:
| Q |
265 |
ccaatgcatatgatagaag-----tgtcttttaactaaatgtgtatctagtgcgnnnnnnnnnnnacttacgcaagagaatgaagagaaatagagcgcgc |
359 |
Q |
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| T |
27693449 |
ccaatgcatatgatagaagctaagtgtcttttaactaaatgtgtatctagtgcgtttttttttttacttacgcaagagaatgaagaaaaatagagcgccc |
27693548 |
T |
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| Q |
360 |
actgctgtatcgtatatcatgctgcggtatgacaattgttcctcttcccggtcacggtctctgtcttgctgatgctgttcacagcgttttggtcgccaac |
459 |
Q |
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| T |
27693549 |
attgctgtatcgtatatcatgctggggtatgacaattgttcctcttcccggtcacggtctctgtcttgctgatgctgttcacagcgttttggtcgccaac |
27693648 |
T |
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| Q |
460 |
gaagctcaattccgttgacatactccctgtatacatctggataacgacacttgctgctattacatttcagctttccatcccagctactcataattacctt |
559 |
Q |
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| T |
27693649 |
gaagctcaattccgttgacatactccctgtatacatctggataaccacacttgctgctattacatttcagctttccatcccagctactcataattacctt |
27693748 |
T |
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| Q |
560 |
catctc |
565 |
Q |
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|||||| |
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| T |
27693749 |
catctc |
27693754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 27693204 - 27693383
Alignment:
| Q |
20 |
cactgtgcaaatataccaattattaataaacagatttattattctaatccataatacggtataatacaatatactactagtttggtgatcatccacagag |
119 |
Q |
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| T |
27693204 |
cactgtgcaaatataccaattattaataaaaagatttattattctaatccataatacggtataatacaatatactactagtttggtgatcatccacagag |
27693303 |
T |
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| Q |
120 |
aatgttgaatatcctaatgaatttcttgtaagttgtaattcaatggtgtttcaggagacagagtaatgcatatatatttc |
199 |
Q |
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| T |
27693304 |
aatgttgaatatcctaatgaatttcttgtaagttgtaattcaatggtgtttcaggagacaaagtaatgcatgtatatttc |
27693383 |
T |
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