View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15655_low_1 (Length: 759)

Name: NF15655_low_1
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15655_low_1
NF15655_low_1
[»] chr1 (5 HSPs)
chr1 (102-741)||(11918517-11919150)
chr1 (1-106)||(11918353-11918458)
chr1 (176-205)||(12070627-12070656)
chr1 (172-205)||(32143786-32143819)
chr1 (176-205)||(32595102-32595131)
[»] chr5 (2 HSPs)
chr5 (170-205)||(5411773-5411808)
chr5 (176-205)||(36864065-36864094)
[»] scaffold0102 (1 HSPs)
scaffold0102 (176-205)||(33833-33862)
[»] chr8 (1 HSPs)
chr8 (177-206)||(39023015-39023044)
[»] chr7 (2 HSPs)
chr7 (176-205)||(26945512-26945541)
chr7 (176-205)||(34227893-34227922)
[»] chr6 (2 HSPs)
chr6 (176-205)||(21384787-21384816)
chr6 (176-205)||(25119104-25119133)
[»] chr4 (3 HSPs)
chr4 (176-205)||(2124562-2124591)
chr4 (176-205)||(12722955-12722984)
chr4 (176-205)||(53526469-53526498)
[»] chr3 (3 HSPs)
chr3 (176-205)||(16653495-16653524)
chr3 (176-205)||(19012390-19012419)
chr3 (176-205)||(19012579-19012608)
[»] chr2 (2 HSPs)
chr2 (176-205)||(20194044-20194073)
chr2 (176-205)||(34726813-34726842)


Alignment Details
Target: chr1 (Bit Score: 565; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 102 - 741
Target Start/End: Original strand, 11918517 - 11919150
Alignment:
Q  102 taggagcctttcactcattcttatcagcaatggagcgtaccttaattgtagcatttactttgtaactgatcggatgcggttatggtgcataaggaaattc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||| |    
T  11918517 taggagcctttcactcattcttatcagcaatggagcgtaccttaattgtagcatttactctgtaactgatcgtgtgcggttatggtgcataaggaaatcc 11918616  T
Q  202 ttatatacacccaacactctatcaatgatgtcactatatatacacctgttgtaaccttattaataatatcaatgcaaaccattttcattcaattacttta 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11918617 ttatatacacccaacactctatcaatgatgtcactatatatacacctgttgtaaccttattaataatatcaatgcaaaccattttcattcaattacttta 11918716  T
Q  302 tatggtatcagcagcttttctgcttaacaacattcgattcaagtatacaccatgtcttcctcaaccagtgaaacaaacaatcaccttattgctgacaaca 401  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11918717 tatggtatcagcagcttttctgcttaacaacattcgatccaagtatacaccatgtcttcctcaaccagtgaaacaaacaatcaccttattgctgacaaca 11918816  T
Q  402 atcaaatagttgtctccctcaacgcccaacactctatcaaattgactgccaacaactatcctgcttggcaggttctgatgaatgccctccttgtaggaca 501  Q
    ||      |||||| |||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11918817 at------gttgtcgccctcaacacccagcactctatcaaattgactgccaacgactatcctgcttggcaggttctgatgaatgccctccttgtaggaca 11918910  T
Q  502 tgacctcattggttatgtcgatggtacaaaaccctgtccatcagaaggtcacaaagatctttcacactggaaacgtcaggatcaattcattattcatgct 601  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11918911 tgacctcattggttatgtcgatggtacaaaaccctgtccagcagaaggtcacaaagatctttcacactggaaacgtcaggatcaattcattattcatgct 11919010  T
Q  602 atcatttcctctgttgatcaaagtgtggtcacattactaggaaatgtcaagaattccaagcaaacttgggaaattctgaacaaaacctttgcaagcaaga 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11919011 atcatttcctctgttgatcaaagtgtggtcacattactaggaaatgtcaagaattccaagcaagcttgggaaattctgaacaaaacctttgcaagcaaga 11919110  T
Q  702 caagatccagaatcattcatttgaaagagaagctgtcaag 741  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  11919111 caagatccagaatcattaatttgaaagagaagttgtcaag 11919150  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 11918353 - 11918458
Alignment:
Q  1 aataaagttataccttaagacctaataaagggtagagtaggtagataatagataactatgatttagtcaacataatagttgtcctagctgttactttgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11918353 aataaagttataccttaagacctaataaagggtagagtaggtagataatagataactatgatttagtcaacataatagttgtcctagctgttactttgat 11918452  T
Q  101 gtagga 106  Q
     |||||    
T  11918453 ttagga 11918458  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 12070656 - 12070627
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  12070656 tgcggttatggtgcataaggaaattcttat 12070627  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 32143819 - 32143786
Alignment:
Q  172 cggatgcggttatggtgcataaggaaattcttat 205  Q
    |||||||||||||||||||||||||||| |||||    
T  32143819 cggatgcggttatggtgcataaggaaatccttat 32143786  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 32595102 - 32595131
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  32595102 tgcggttatggtgcataaggaaattcttat 32595131  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 5411808 - 5411773
Alignment:
Q  170 atcggatgcggttatggtgcataaggaaattcttat 205  Q
    ||||| ||||||||||||||||||||||||||||||    
T  5411808 atcgggtgcggttatggtgcataaggaaattcttat 5411773  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 36864065 - 36864094
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  36864065 tgcggttatggtgcataaggaaattcttat 36864094  T

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Target: scaffold0102 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 33862 - 33833
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  33862 tgcggttatggtgcataaggaaattcttat 33833  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 39023044 - 39023015
Alignment:
Q  177 gcggttatggtgcataaggaaattcttata 206  Q
    ||||||||||||||||||||||||||||||    
T  39023044 gcggttatggtgcataaggaaattcttata 39023015  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 26945512 - 26945541
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  26945512 tgcggttatggtgcataaggaaattcttat 26945541  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 34227922 - 34227893
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  34227922 tgcggttatggtgcataaggaaattcttat 34227893  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 21384787 - 21384816
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  21384787 tgcggttatggtgcataaggaaattcttat 21384816  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 25119104 - 25119133
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  25119104 tgcggttatggtgcataaggaaattcttat 25119133  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 2124591 - 2124562
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  2124591 tgcggttatggtgcataaggaaattcttat 2124562  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 12722984 - 12722955
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  12722984 tgcggttatggtgcataaggaaattcttat 12722955  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 53526498 - 53526469
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  53526498 tgcggttatggtgcataaggaaattcttat 53526469  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 16653495 - 16653524
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  16653495 tgcggttatggtgcataaggaaattcttat 16653524  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 19012390 - 19012419
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  19012390 tgcggttatggtgcataaggaaattcttat 19012419  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 19012608 - 19012579
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  19012608 tgcggttatggtgcataaggaaattcttat 19012579  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 20194073 - 20194044
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  20194073 tgcggttatggtgcataaggaaattcttat 20194044  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 34726842 - 34726813
Alignment:
Q  176 tgcggttatggtgcataaggaaattcttat 205  Q
    ||||||||||||||||||||||||||||||    
T  34726842 tgcggttatggtgcataaggaaattcttat 34726813  T

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