View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15655_low_15 (Length: 472)

Name: NF15655_low_15
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15655_low_15
NF15655_low_15
[»] chr1 (7 HSPs)
chr1 (14-458)||(29422941-29423385)
chr1 (122-458)||(29453326-29453662)
chr1 (124-458)||(29443343-29443677)
chr1 (125-458)||(29467802-29468135)
chr1 (14-125)||(29443705-29443825)
chr1 (28-104)||(29468200-29468276)
chr1 (13-69)||(29453744-29453800)
[»] chr2 (46 HSPs)
chr2 (174-431)||(12018937-12019194)
chr2 (173-435)||(9320817-9321079)
chr2 (173-458)||(9284212-9284497)
chr2 (173-436)||(9328434-9328697)
chr2 (173-436)||(10352944-10353207)
chr2 (173-436)||(11987531-11987794)
chr2 (174-458)||(10335692-10335964)
chr2 (173-458)||(12012568-12012856)
chr2 (173-458)||(9061163-9061466)
chr2 (177-458)||(9364467-9364748)
chr2 (173-456)||(9315854-9316131)
chr2 (185-458)||(12006140-12006413)
chr2 (14-125)||(12012939-12013051)
chr2 (173-281)||(9291757-9291865)
chr2 (296-436)||(8573549-8573689)
chr2 (174-282)||(8579703-8579811)
chr2 (296-436)||(10347743-10347883)
chr2 (219-433)||(7115689-7115906)
chr2 (296-456)||(9065617-9065777)
chr2 (14-125)||(11987877-11987989)
chr2 (296-458)||(9291901-9292057)
chr2 (173-281)||(8573725-8573833)
chr2 (14-119)||(9364245-9364351)
chr2 (180-281)||(10371679-10371780)
chr2 (357-458)||(16269108-16269209)
chr2 (14-76)||(9291566-9291628)
chr2 (14-119)||(9315647-9315753)
chr2 (14-123)||(9320599-9320709)
chr2 (373-458)||(10371893-10371978)
chr2 (14-122)||(12019282-12019388)
chr2 (173-281)||(10347596-10347707)
chr2 (173-273)||(9274335-9274435)
chr2 (373-456)||(7611974-7612057)
chr2 (173-292)||(9065802-9065921)
chr2 (374-435)||(9274557-9274618)
chr2 (14-66)||(12006543-12006595)
chr2 (222-282)||(16268952-16269012)
chr2 (173-279)||(10341184-10341293)
chr2 (373-456)||(17566107-17566190)
chr2 (14-112)||(9066038-9066135)
chr2 (14-74)||(10352738-10352798)
chr2 (55-125)||(10371508-10371579)
chr2 (20-116)||(9284606-9284703)
chr2 (31-76)||(9295097-9295142)
chr2 (24-76)||(9274200-9274252)
chr2 (56-123)||(9328260-9328328)
[»] chr8 (2 HSPs)
chr8 (173-435)||(41966750-41967015)
chr8 (14-117)||(41967132-41967236)
[»] chr3 (4 HSPs)
chr3 (296-435)||(37462447-37462586)
chr3 (14-119)||(37462098-37462205)
chr3 (179-280)||(37462306-37462410)
chr3 (375-435)||(39427680-39427740)
[»] chr4 (4 HSPs)
chr4 (180-436)||(26574700-26574959)
chr4 (174-276)||(561019-561121)
chr4 (15-74)||(26574525-26574584)
chr4 (389-435)||(561273-561319)
[»] chr7 (6 HSPs)
chr7 (296-458)||(45243657-45243819)
chr7 (296-436)||(45237908-45238048)
chr7 (174-281)||(45230244-45230351)
chr7 (174-281)||(45243505-45243613)
chr7 (373-458)||(45230467-45230555)
chr7 (173-281)||(45237761-45237869)
[»] scaffold0667 (3 HSPs)
scaffold0667 (299-458)||(4432-4591)
scaffold0667 (174-282)||(4289-4394)
scaffold0667 (14-119)||(4073-4179)
[»] chr5 (1 HSPs)
chr5 (374-435)||(36224454-36224515)


Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 458
Target Start/End: Original strand, 29422941 - 29423385
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgaccttttaacagagtttaaatagatatatcatatgatcggtcc 113  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29422941 aggtagagacttcaaaataattagagaatcattgtcatataataagaattcaatttgaccttttaacagagtttaactagatatatcatatgatcggtcc 29423040  T
Q  114 attgaattgataatcaataagaagtaccttttcttgcttgtgcgattctccttcctagcgaaggaaggtgatacaagacttccaacacaaatcatggctt 213  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29423041 attgaattgataatcaataagaagtaccttctcttgcttgtgcgattctccttcctagggaaggaaggtgatacaagacttccaacacaaatcatggctt 29423140  T
Q  214 gatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttctcaggatctacttgcaacagaaccatacttcc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29423141 gatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttctcaggatctacttgcaacagaaccatacctcc 29423240  T
Q  314 atcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatat 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29423241 atcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatat 29423340  T
Q  414 tctttcatcatccaaacatcaatgttaacagtttgataattcaca 458  Q
    |||||||||| |||||||||||| |||||||||||||||||||||    
T  29423341 tctttcatcagccaaacatcaattttaacagtttgataattcaca 29423385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 122 - 458
Target Start/End: Complemental strand, 29453662 - 29453326
Alignment:
Q  122 gataatcaataagaagtaccttttcttgcttgtgcgattctccttcctagcgaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaa 221  Q
    |||||| |||||| |||||||| ||||||||||   |||||| ||||| | |||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  29453662 gataataaataaggagtaccttctcttgcttgtataattctctttcctggggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaa 29453563  T
Q  222 ttaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttctcaggatctacttgcaacagaaccatacttccatcgctcg 321  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  29453562 ttaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaacagcttctcacaatctacttccaacagaaccatacttccatcgctcg 29453463  T
Q  322 aataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatattctttcat 421  Q
    ||||||||||| ||| ||||| ||||||||||||  ||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29453462 aataagctaaaggccacaaagttttcaaaggtaaaatgaaacatgattccgccaaagtaaaaagttcacaccagctatctctacatccatattctttcat 29453363  T
Q  422 catccaaacatcaatgttaacagtttgataattcaca 458  Q
    || |||||||||||| |||||||||||||||||||||    
T  29453362 cacccaaacatcaattttaacagtttgataattcaca 29453326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 124 - 458
Target Start/End: Complemental strand, 29443677 - 29443343
Alignment:
Q  124 taatcaataagaagtaccttttcttgcttgtgcgattctccttcctagcgaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaatt 223  Q
    |||||||||||||||||||| ||||||||||  ||||||||||||| | ||| ||||||  ||||||||||||||||||||| ||||| ||||| |   |    
T  29443677 taatcaataagaagtaccttctcttgcttgtttgattctccttcctggggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccct 29443578  T
Q  224 aggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttctcaggatctacttgcaacagaaccatacttccatcgctcgaa 323  Q
    ||||||||||| |||| |||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  29443577 aggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaa 29443478  T
Q  324 taagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatattctttcatca 423  Q
    ||| |||||| |||||||||| ||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443477 taacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatattctttcatca 29443378  T
Q  424 tccaaacatcaatgttaacagtttgataattcaca 458  Q
     |||||||||||| ||| |||||||||||||||||    
T  29443377 cccaaacatcaattttagcagtttgataattcaca 29443343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 125 - 458
Target Start/End: Complemental strand, 29468135 - 29467802
Alignment:
Q  125 aatcaataagaagtaccttttcttgcttgtgcgattctccttcctagcgaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaatta 224  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||| ||  ||||||    
T  29468135 aatcaataagaagtaccttctcttgcttgtgcgattctcgttcctagggaaggaaggtggtacaagacttccaacacaaatcatagcttcattcaaatta 29468036  T
Q  225 ggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttctcaggatctacttgcaacagaaccatacttccatcgctcgaat 324  Q
    |||||||||| |||| || |||| |||||||||||||||||||||||||||| ||||||| | |||||||  ||||||||||||||||||||||||||||    
T  29468035 ggaattccttcaacataattaacatgttcactcttgagatcataccaaaacaacttctcatggtctacttcaaacagaaccatacttccatcgctcgaat 29467936  T
Q  325 aagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcat 424  Q
    || ||||| ||||||||| || |||  |||| ||||||||||||    |||||||||||||||||| ||| ||||||||||||||||||||||||||||     
T  29467935 aacctaaaggcctcaaagattccaactgtaaagtgaaacacgatctaaccaaagtaaaaagtttacgccaactatctctacatccatattctttcatcaa 29467836  T
Q  425 ccaaacatcaatgttaacagtttgataattcaca 458  Q
    |||||||||||| |||  ||||||||||||||||    
T  29467835 ccaaacatcaattttactagtttgataattcaca 29467802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 29443825 - 29443705
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattca-------atttgaccttttaaca--gagtttaaatagatatatcatat 104  Q
    |||||||||||||||||||||||||||||| ||||| ||| |||||||||||       ||||||||||||||||  |||||||| ||||||||||||||    
T  29443825 aggtagagacttcaaaataattagagaatccttgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatcatat 29443726  T
Q  105 gatcggtccattgaattgata 125  Q
    ||| |||||||||||||||||    
T  29443725 gatgggtccattgaattgata 29443705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 29468276 - 29468200
Alignment:
Q  28 aaataattagagaatcattgtcgtataataagaattcaatttgaccttttaacagagtttaaatagatatatcatat 104  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  29468276 aaataattagagaatcattgtcctataataagaattcaatttgaccttttaacagagtttaactgcatatatcatat 29468200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 29453800 - 29453744
Alignment:
Q  13 taggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaattt 69  Q
    ||||||||||||||||| ||||||||||||| ||||  |||||||||||||||||||    
T  29453800 taggtagagacttcaaagtaattagagaatccttgttctataataagaattcaattt 29453744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 174 - 431
Target Start/End: Complemental strand, 12019194 - 12018937
Alignment:
Q  174 aaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaa 273  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| | |||||| | |||||||||||    
T  12019194 aaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaatcataccaaa 12019095  T
Q  274 acagcttctcaggatctacttgcaacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgc 373  Q
     |||| | | | ||| ||| | ||||| |||| |  ||||||| ||||||||| ||||| | ||||||  | | ||||||||   ||||||||||||       
T  12019094 ccagcatattatgatttacatccaacaaaaccttttttccatcactcgaataacctaaagggctcaaaaatctaaaaggtaaaacgaaacacgattccat 12018995  T
Q  374 caaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaaca 431  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  12018994 caaagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaaca 12018937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 173 - 435
Target Start/End: Original strand, 9320817 - 9321079
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    |||||||||||  ||||||||||||||||||| |||  ||  || ||||| ||||||||||| |||| ||||||||||| ||||||| | ||||||||||    
T  9320817 gaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaa 9320916  T
Q  273 aacagcttctcaggatctacttgcaacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctg 372  Q
    ||||||||||||| ||||||   ||||| |||| |  ||||||| ||||||||| ||||| ||||||||| ||||||||||||   | |||||||||       
T  9320917 aacagcttctcagcatctaccctcaacaaaaccttttttccatcactcgaataacctaaaggcctcaaagatttcaaaggtaaatcgtaacacgatttaa 9321016  T
Q  373 ccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaa 435  Q
    ||| |||||||||||||||||| ||||||||| | |||||||||||||||| |||||||||||    
T  9321017 ccatagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcaa 9321079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 173 - 458
Target Start/End: Complemental strand, 9284497 - 9284212
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    |||||||||||  ||||||||| ||||||||||||| |||| ||| |||||||||||||||| |||| || ||||||| |||||||| | ||||||||||    
T  9284497 gaaggaaggtggcacaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatcataccaa 9284398  T
Q  273 aacagcttctcaggatctacttgcaacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctg 372  Q
    | |||||||| |  ||||| ||  || |||||| |||| ||||| || |||||| ||||| ||||||||| ||||||| |||| ||||| |  ||||       
T  9284397 accagcttcttacaatctatttctaatagaaccttactaccatcactagaataacctaaaggcctcaaagatttcaaacgtaaagtgaaccgtgatttaa 9284298  T
Q  373 ccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattcaca 458  Q
    |||||||||||| ||||||||| ||||||||| | |||||||||||||||| |||||| ||||| |||  ||||||||||||||||    
T  9284297 ccaaagtaaaaattttacaccaactatctctagaaccatattctttcatcacccaaacgtcaattttagtagtttgataattcaca 9284212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 173 - 436
Target Start/End: Original strand, 9328434 - 9328697
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    ||||||||||| |||||||||||||||| ||| |||  | | || ||||| ||||||||||| |||| ||||||||||| ||||| | | ||||||| ||    
T  9328434 gaaggaaggtggtacaagacttccaacagaaaacataacatcatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaa 9328533  T
Q  273 aacagcttctcaggatctacttgcaacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctg 372  Q
    ||||||||||||  ||| ||   ||||| |||| |  ||||||| ||| ||||| ||||| ||||||||| ||||||||||||   |||||||||||       
T  9328534 aacagcttctcaaaatccaccctcaacaaaaccttttttccatcactcaaataacctaaaggcctcaaagatttcaaaggtaaatggaaacacgatttaa 9328633  T
Q  373 ccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaat 436  Q
    ||| |||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||    
T  9328634 ccatagtaaaaagtttacaccaactatctctatatccatattgtttcatcacccaaacatcaat 9328697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 173 - 436
Target Start/End: Original strand, 10352944 - 10353207
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    |||| |||||| |||||||||||||||||||||||| |  | ||| |||||| ||||| |||||||| |||||||||||| |||||  | ||||||||||    
T  10352944 gaagtaaggtggtacaagacttccaacacaaatcatagtgtcatccaaattaagaatttcttgaacataactaacttgtttactctccaaatcataccaa 10353043  T
Q  273 aacagcttctcaggatctacttgcaacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctg 372  Q
    || || ||||||  ||||||   ||||| |||| |  ||| ||| ||||||||| ||||||||||||||| || |||||||||   |||| | ||||       
T  10353044 aatagattctcaacatctaccctcaacaaaaccttttttctatcactcgaataacctaaaagcctcaaagattgcaaaggtaaatcgaaagaagatttaa 10353143  T
Q  373 ccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaat 436  Q
    ||| |||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  10353144 ccacagtaaaaagtttacaccaactctctctacatccatattctttcatcacccaaacatcaat 10353207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 173 - 436
Target Start/End: Complemental strand, 11987794 - 11987531
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    |||||| |||| |||||||||||||||||||||||| |||| |||||| ||||||||||| | |||| |||||| |||||||||||| | ||||||||||    
T  11987794 gaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcataccaa 11987695  T
Q  273 aacagcttctcaggatctacttgcaacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctg 372  Q
    | ||||||||   |||  |  | ||||| |||| |  | ||||| ||||||||| | ||| | ||||||| ||||||||||||   ||||||||||||      
T  11987694 accagcttcttgtgattaagatccaacaaaacctttttaccatcactcgaataacccaaagggctcaaagatttcaaaggtaaaacgaaacacgattcca 11987595  T
Q  373 ccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaat 436  Q
     ||| || |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  11987594 tcaatgtgaaaagtttacaccaactatctctacatccatattctttcatcacccaaatatcaat 11987531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 174 - 458
Target Start/End: Original strand, 10335692 - 10335964
Alignment:
Q  174 aaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaa 273  Q
    ||||||||||| ||||||||||||||||||||||| |  | ||| |||||||||||||||| |||| |||||| |||||||||||| | |||||||||||    
T  10335692 aaggaaggtgaaacaagacttccaacacaaatcatagtgtcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaa 10335791  T
Q  274 acagcttctcaggatctacttgcaacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgc 373  Q
    ||| ||||| |  ||| | || ||| |||||| |||||||||| ||  ||||| ||||| ||||||||      |||  |      ||||||||||   |    
T  10335792 acaacttcttacaatcgatttccaatagaaccttacttccatcactacaataacctaaaggcctcaaa------aaatct------aaacacgatttaac 10335879  T
Q  374 caaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattcaca 458  Q
    |||||||||| |||||||||| ||||||||||| |||||||||||||||| |||||||||||| |||  ||||||||||||||||    
T  10335880 caaagtaaaatgtttacaccaactatctctacagccatattctttcatcacccaaacatcaattttagtagtttgataattcaca 10335964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 173 - 458
Target Start/End: Complemental strand, 12012856 - 12012568
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    |||||| |||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||   |||||| | ||||||||||    
T  12012856 gaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaaattaggaattccttcaacataactaacttg---actcttcaaatcataccaa 12012760  T
Q  273 aacagcttctcaggatctacttgc------aacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacg 366  Q
    | |||||||| | ||| ||| | |      |||| ||||||  | |||||  |||||||| | ||| | ||||||  | ||||||||||   ||||||||    
T  12012759 accagcttcttatgatttacctccaacaaaaacaaaaccattttaccatcattcgaataacccaaaggtctcaaaaatatcaaaggtaaaacgaaacacg 12012660  T
Q  367 attctgccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattcaca 458  Q
    ||||  |||||||||||||||||||||| |||||| |||| |||||||||||||||| | | |||||||| |||  |||||||| |||||||    
T  12012659 attccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcaca 12012568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 173 - 458
Target Start/End: Complemental strand, 9061466 - 9061163
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    |||| |||||||||| |||||||||||| ||| ||| |||| ||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  9061466 gaagaaaggtgatacgagacttccaacataaaacatagcttcatcaaaattaggaattccttcaacataactaacttgttcactcttgagatcataccaa 9061367  T
Q  273 aacagcttc------------------tcaggatctacttgcaacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggta 354  Q
    |||||||||                  | ||||| | ||| |||||||||| ||| |||||| || ||||||  |||  ||||||||   | |||||||     
T  9061366 aacagcttcctaagagttttatccaagttaggatttgcttccaacagaaccttacctccatcactagaataacataacggcctcaaaaagtccaaaggtg 9061267  T
Q  355 aggtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataatt 454  Q
    |  ||||||||||||   |||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||| |||  || || ||||||    
T  9061266 aattgaaacacgatttaaccaaagtaaaaagtttacaccaactatctctagatccatagtctttcatcacccaaacatcaattttagtagcttcataatt 9061167  T
Q  455 caca 458  Q
    ||||    
T  9061166 caca 9061163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 177 - 458
Target Start/End: Original strand, 9364467 - 9364748
Alignment:
Q  177 gaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaaca 276  Q
    ||||||| ||||||||| |||||||||||||| |||| ||  | ||||||||||||| |||||| | |||| | ||||||||||||||| ||||||||||    
T  9364467 gaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaaca 9364566  T
Q  277 gcttctcaggatctacttgcaacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacga-ttctgcca 375  Q
    |||||| | |||||| || ||| | |||| |  ||||||| ||||||||| ||||| ||||||| | ||||||||||   | |||| | || | |  |||    
T  9364567 gcttcttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaaggtgtcg-gaaaaaagagtcccacca 9364665  T
Q  376 aagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattcaca 458  Q
    ||||||| | ||||||||| |||||| |  |||||||||||||||||| |||||||||||| | |  ||||||||||||||||    
T  9364666 aagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcaca 9364748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 173 - 456
Target Start/End: Original strand, 9315854 - 9316131
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    ||||||||||| |||||||||| ||||||||||||| |||| ||| ||||||| |||||||| |||| || |||||||||||||| | |  ||| |||||    
T  9315854 gaaggaaggtggtacaagactttcaacacaaatcatagcttcatccaaattagaaattccttcaacataaataacttgttcactcatcaagtcacaccaa 9315953  T
Q  273 aacagcttctcaggatctacttgcaacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctg 372  Q
    |||||||||| |  ||||| || ||| |||||| ||||||| || || |||||| ||||| || |||||   ||||||| ||| |||||||| || |       
T  9315954 aacagcttcttacaatctatttccaatagaaccttacttccgtcactagaataacctaaaggcttcaaaaaattcaaagataaagtgaaacatgaattaa 9316053  T
Q  373 ccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattca 456  Q
    ||||||||||||||||||||||       ||| ||||||| |||||||||| |||||||||| | |||  ||||||||||||||    
T  9316054 ccaaagtaaaaagtttacacca------actagatccatagtctttcatcacccaaacatcagttttagtagtttgataattca 9316131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 185 - 458
Target Start/End: Complemental strand, 12006413 - 12006140
Alignment:
Q  185 tacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttctca 284  Q
    |||||||||||||||||||||||| |||| ||||||||| |||||||| | ||   || |||||| ||||||||| | ||||||||||| |||||||| |    
T  12006413 tacaagacttccaacacaaatcatcgcttcatcgaaatttggaattccctcaatgtaattaacttcttcactcttcaaatcataccaaaccagcttctta 12006314  T
Q  285 ggatctacttgcaacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaa 384  Q
     ||| ||| |  |||| ||   |  ||||||| || |||||| ||||| |  |||||| | ||| ||||||   |||||||||| |   |||||||||||    
T  12006313 tgatttacctcaaacaaaagtttttttccatcacttgaataacctaaagggatcaaagatatcacaggtaaaacgaaacacgatcccatcaaagtaaaaa 12006214  T
Q  385 gtttacaccagctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattcaca 458  Q
    |||||||||| |||||| |||| |||||||||||||||| ||| |||||||| |||  ||||||||||||||||    
T  12006213 gtttacaccaactatctttacaaccatattctttcatcacccatacatcaatcttagtagtttgataattcaca 12006140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 12013051 - 12012939
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgaccttttaaca--gagtttaaatagatatatcatatgatcggt 111  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||||||  |||| ||| || |||||||||||||| |||    
T  12013051 aggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaatttgacc-tttaacatggagtctaactacatatatcatatgatgggt 12012953  T
Q  112 ccattgaattgata 125  Q
    ||||||||||||||    
T  12012952 ccattgaattgata 12012939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 9291757 - 9291865
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    ||||||||||| || ||||||| ||||||||||||| |||| ||| |||||||||||||||| |||| |||||| |||||||||||| | ||||||||||    
T  9291757 gaaggaaggtggtagaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaa 9291856  T
Q  273 aacagcttc 281  Q
    |||||||||    
T  9291857 aacagcttc 9291865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 296 - 436
Target Start/End: Complemental strand, 8573689 - 8573549
Alignment:
Q  296 caacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccag 395  Q
    |||||||||| |||||||||| || |||||| ||||| ||||| ||| ||| ||| ||   |||||||||||||   | ||||||||||||||||||||     
T  8573689 caacagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaagtttacaccaa 8573590  T
Q  396 ctatctctacatccatattctttcatcatccaaacatcaat 436  Q
    ||||||||| | |||||||||||||||| ||||||||||||    
T  8573589 ctatctctagaaccatattctttcatcacccaaacatcaat 8573549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 174 - 282
Target Start/End: Complemental strand, 8579811 - 8579703
Alignment:
Q  174 aaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaa 273  Q
    |||||||||| || |||  |||||||| ||||||| | || || ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||    
T  8579811 aaggaaggtggtagaagggttccaacataaatcatagtttcattgaaattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaa 8579712  T
Q  274 acagcttct 282  Q
    |||||||||    
T  8579711 acagcttct 8579703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 296 - 436
Target Start/End: Original strand, 10347743 - 10347883
Alignment:
Q  296 caacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccag 395  Q
    |||||||||| |||||||||| || ||||||  ||   |||||||   ||||||||||||   ||||||||| || |||| ||||||||||||||||||     
T  10347743 caacagaaccttacttccatcactagaataacatatgggcctcaacaatttcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacaccaa 10347842  T
Q  396 ctatctctacatccatattctttcatcatccaaacatcaat 436  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  10347843 ctatctctacatccatattctttcatgacccaaacatcaat 10347883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 433
Target Start/End: Complemental strand, 7115906 - 7115689
Alignment:
Q  219 aaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttctcaggatctacttgcaacagaaccatacttccatcgc 318  Q
    |||||||||||||||| |||||||||||||||||| ||||| | ||||||||||| |||||||  |  ||||| || ||| |||||| | |||||||| |    
T  7115906 aaattaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttcctacaatctatttccaatagaaccttgcttccatcac 7115807  T
Q  319 tcgaataagctaaaagcct---caaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatattc 415  Q
    | |||||| ||||| ||||   | | |   |||||| |||   ||||||||| |   |||| |||||||||||||||||||| |||||| |||||||||     
T  7115806 tagaataacctaaaggcctgaaccatgtaatcaaagataaatcgaaacacgaattaaccaatgtaaaaagtttacaccagctgtctctagatccatattg 7115707  T
Q  416 tttcatcatccaaacatc 433  Q
    |||||||| |||||||||    
T  7115706 tttcatcacccaaacatc 7115689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 456
Target Start/End: Complemental strand, 9065777 - 9065617
Alignment:
Q  296 caacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccag 395  Q
    |||||||||| |||||||||| |  |||||| ||| | ||||| ||||| ||||| || |   |||||| ||||   ||||||||||||||||||||||     
T  9065777 caacagaaccttacttccatcaccggaataacctagaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaa 9065678  T
Q  396 ctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattca 456  Q
    ||||||||| |||||||||||||||||| |||| ||||||| |||  ||||| ||||||||    
T  9065677 ctatctctagatccatattctttcatcacccaaccatcaatattagtagtttcataattca 9065617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 11987989 - 11987877
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgacctttta-acagagtttaaatagatatatcatatgatcggtc 112  Q
    |||||||||||||||| |||||||| |||| ||||| ||||||| |||||||||||||||||| | | | ||||||| || |||||||| ||||| ||||    
T  11987989 aggtagagacttcaaagtaattagaaaatccttgtcctataataggaattcaatttgacctttaacataaagtttaactacatatatcacatgatgggtc 11987890  T
Q  113 cattgaattgata 125  Q
    |||||||||||||    
T  11987889 cattgaattgata 11987877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 296 - 458
Target Start/End: Original strand, 9291901 - 9292057
Alignment:
Q  296 caacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccag 395  Q
    |||||||||| |||||||||| || ||||||  |||| ||||||||| ||||||||      |||| | |||||   ||||||||||||||||||||||     
T  9291901 caacagaaccttacttccatccctagaataacataaaggcctcaaagatttcaaag------tgaaccgcgatttaaccaaagtaaaaagtttacaccaa 9291994  T
Q  396 ctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattcaca 458  Q
    ||||||||| | ||||||| |||||||| |||||||||||| |||  ||||| ||||||||||    
T  9291995 ctatctctagaaccatattgtttcatcacccaaacatcaattttagtagtttcataattcaca 9292057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 8573833 - 8573725
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    |||| |||||| |||||||||||||||||||| ||| |||  ||   ||||||||||||||| |||| |||| |||||||||||||| | ||||||||||    
T  8573833 gaagaaaggtggtacaagacttccaacacaaaacatagctgcattccaattaggaattccttcaacataactgacttgttcactcttcaaatcataccaa 8573734  T
Q  273 aacagcttc 281  Q
    |||||||||    
T  8573733 aacagcttc 8573725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 9364245 - 9364351
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgacctttta-acagagtttaaatagatatatcatatgatcggtc 112  Q
    ||||| |||||||||| |||||||||| || ||||| |||||||||||||| ||||||||||| | | ||||||||| || |||||||||||||| |||     
T  9364245 aggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacatatatcatatgatgggtt 9364344  T
Q  113 cattgaa 119  Q
    |||||||    
T  9364345 cattgaa 9364351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 10371679 - 10371780
Alignment:
Q  180 ggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagct 279  Q
    |||| ||||||||| |||||||||| ||| || | ||| ||||||| | |||||| |||| ||||||||||||||||||| | |||||||||||||||||    
T  10371679 ggtggtacaagactaccaacacaaaccatagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagct 10371778  T
Q  280 tc 281  Q
    ||    
T  10371779 tc 10371780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 458
Target Start/End: Original strand, 16269108 - 16269209
Alignment:
Q  357 gtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattca 456  Q
    |||||||||||||   |||| ||||||||||| ||||| ||||||||| ||||||| |||||||||| |||||||||||| |||  ||||| ||||||||    
T  16269108 gtgaaacacgatttaaccaaggtaaaaagtttgcaccaactatctctatatccatactctttcatcacccaaacatcaattttagtagtttcataattca 16269207  T
Q  457 ca 458  Q
    ||    
T  16269208 ca 16269209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 9291566 - 9291628
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgaccttt 76  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  9291566 aggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaatttaaccttt 9291628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 9315647 - 9315753
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgaccttt-taacagagtttaaatagatatatcatatgatcggtc 112  Q
    ||||||||| || ||| ||||||| ||||| ||||| ||||||||||||||||||||||||||   | ||||||||| ||  ||||||||||||| ||||    
T  9315647 aggtagagaatttaaagtaattagggaatccttgtcctataataagaattcaatttgacctttagcatagagtttaactacttatatcatatgatgggtc 9315746  T
Q  113 cattgaa 119  Q
    |||||||    
T  9315747 cattgaa 9315753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 9320599 - 9320709
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgacct-tttaacagagtttaaatagatatatcatatgatcggtc 112  Q
    |||||||||||||||| ||||||||| ||| |||||  ||||||| ||||||||||||||| |   | ||||||||| |  |||||||||||||| ||||    
T  9320599 aggtagagacttcaaagtaattagagtatccttgtccgataataaaaattcaatttgacctatagcatagagtttaacttaatatatcatatgatgggtc 9320698  T
Q  113 cattgaattga 123  Q
    |||||||||||    
T  9320699 cattgaattga 9320709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 373 - 458
Target Start/End: Original strand, 10371893 - 10371978
Alignment:
Q  373 ccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattcaca 458  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||||| ||||| ||||| ||||  ||||| ||||| ||||    
T  10371893 ccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccaca 10371978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 12019388 - 12019282
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgaccttttaacagagtttaaatagatatatcatatgatcggtcc 113  Q
    |||||||||||||||| ||||||||||||| ||||| |||||||||||||| | |  || ||   | ||||||||| || |||||||||||||| |||||    
T  12019388 aggtagagacttcaaagtaattagagaatccttgtcctataataagaattccaat--acattaacatagagtttaactacatatatcatatgatgggtcc 12019291  T
Q  114 attgaattg 122  Q
    |||||||||    
T  12019290 attgaattg 12019282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 10347596 - 10347707
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattagga---attccttgaacacaactaacttgttcactcttgagatcatac 269  Q
    |||||||||||  ||||||||||||||||||| ||| | || ||  | |||||||   ||||||| |||| |||||| |||||||||||| | |||||||    
T  10347596 gaaggaaggtgggacaagacttccaacacaaaacatagtttcattcatattaggaggaattccttcaacataactaatttgttcactcttcaaatcatac 10347695  T
Q  270 caaaacagcttc 281  Q
    ||||||||||||    
T  10347696 caaaacagcttc 10347707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 9274335 - 9274435
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    |||||| |||| ||||| ||||||||| ||||| || | |  || ||| ||||||||||||| |||| ||||||||||||||||||| | ||||||||||    
T  9274335 gaaggagggtggtacaaaacttccaacccaaataatagttccattgaagttaggaattcctttaacaaaactaacttgttcactcttcaaatcataccaa 9274434  T
Q  273 a 273  Q
    |    
T  9274435 a 9274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 456
Target Start/End: Original strand, 7611974 - 7612057
Alignment:
Q  373 ccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattca 456  Q
    |||||||||| | ||||||||| |||||| |  |||||||||||||||||| |||||||||||  |||| ||||| ||||||||    
T  7611974 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaaacttaatagtttcataattca 7612057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 292
Target Start/End: Complemental strand, 9065921 - 9065802
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    |||||||| || |||||||||| ||||||||||||  |  | ||   ||||||||| ||||| |||| || |||||||||||||||| | ||||||||||    
T  9065921 gaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactcttcaaatcataccaa 9065822  T
Q  273 aacagcttctcaggatctac 292  Q
    || ||||||| | |||||||    
T  9065821 aagagcttctgatgatctac 9065802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 435
Target Start/End: Original strand, 9274557 - 9274618
Alignment:
Q  374 caaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaa 435  Q
    ||||||||||||||||||||| |||||| || | |||||||||||||||| |||||| ||||    
T  9274557 caaagtaaaaagtttacaccaactatctgtagaaccatattctttcatcacccaaacttcaa 9274618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 12006595 - 12006543
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaa 66  Q
    |||||||||||||||| ||||||||||||| ||||| || |||||||||||||    
T  12006595 aggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattcaa 12006543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 16268952 - 16269012
Alignment:
Q  222 ttaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttct 282  Q
    ||||||||||||| |||| |||||||| |||||||||| | |||||||||||||| |||||    
T  16268952 ttaggaattccttcaacataactaactcgttcactcttcaaatcataccaaaacaacttct 16269012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 10341184 - 10341293
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaa---ctaacttgttcactcttgagatcatac 269  Q
    |||| |||||| ||| | |||||||||||| ||||| || | ||| |||| ||||||||||| |||| ||   ||||||||||||||||  | |||||||    
T  10341184 gaagaaaggtggtactatacttccaacacacatcatagcatcatccaaatcaggaattccttcaacataataactaacttgttcactctccaaatcatac 10341283  T
Q  270 caaaacagct 279  Q
    ||||||||||    
T  10341284 caaaacagct 10341293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 456
Target Start/End: Complemental strand, 17566190 - 17566107
Alignment:
Q  373 ccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattca 456  Q
    |||| ||||| | |||||||||  |||||||| ||||||||||||| |||| |||||||||||  |||  ||||||||||||||    
T  17566190 ccaaggtaaacaatttacaccaattatctctaaatccatattctttaatcacccaaacatcaacattagtagtttgataattca 17566107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 9066135 - 9066038
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgaccttttaacagagtttaaatagatatatcatatgatcggtc 112  Q
    ||||||| |||||||| ||||||||||||| || || ||| |||||| |||||||||||| || | || ||||||  || |||||||||||||| ||||    
T  9066135 aggtagaaacttcaaagtaattagagaatctttatcctatgataagacttcaatttgacc-ttgagcaaagtttagctacatatatcatatgatgggtc 9066038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 10352738 - 10352798
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgacct 74  Q
    ||||| |||| ||||| ||||||||||||| || || ||| ||||||||||||||||||||    
T  10352738 aggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaatttgacct 10352798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 10371508 - 10371579
Alignment:
Q  55 ataagaattcaatttgacctttta-acagagtttaaatagatatatcatatgatcggtccattgaattgata 125  Q
    |||||||||||||||||||||| | ||||||||||| |  |||||| ||||||| | ||||||||| |||||    
T  10371508 ataagaattcaatttgacctttaacacagagtttaactgcatatataatatgatggatccattgaactgata 10371579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 9284703 - 9284606
Alignment:
Q  20 agacttcaaaataattagagaatcattgtcgtataataagaattcaatttgacctttta-acagagtttaaatagatatatcatatgatcggtccatt 116  Q
    |||| ||||| ||||| |||| || |||||  ||||||||||||||||||||||||| | | | ||||||| || ||| || ||||||| ||||||||    
T  9284703 agacatcaaagtaattggagactccttgtccgataataagaattcaatttgacctttaatataaagtttaactacataaattatatgatgggtccatt 9284606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 9295142 - 9295097
Alignment:
Q  31 taattagagaatcattgtcgtataataagaattcaatttgaccttt 76  Q
    ||||||||||| |  |||| ||||||||||||||||||||||||||    
T  9295142 taattagagaacccctgtcctataataagaattcaatttgaccttt 9295097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 9274200 - 9274252
Alignment:
Q  24 ttcaaaataattagagaatcattgtcgtataataagaattcaatttgaccttt 76  Q
    |||||| ||||||| ||||| ||||| ||||||||||||||||  ||||||||    
T  9274200 ttcaaagtaattagtgaatccttgtcctataataagaattcaacatgaccttt 9274252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 9328260 - 9328328
Alignment:
Q  56 taagaattcaatttgacctttta-acagagtttaaatagatatatcatatgatcggtccattgaattga 123  Q
    |||||||||||||||||||||   | ||||||||| |  |||||||||||||  |||||||||||||||    
T  9328260 taagaattcaatttgacctttagcatagagtttaacttcatatatcatatgacgggtccattgaattga 9328328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 173 - 435
Target Start/End: Complemental strand, 41967015 - 41966750
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    ||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||| |||| || ||| |||||||||||| | ||||||||||    
T  41967015 gaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaa 41966916  T
Q  273 aacagcttc---tcaggatctacttgcaacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgatt 369  Q
    ||||| |||   |||  |  | |||||||||||||| | ||||||||||| ||| || |||||| || ||| | |||||||| | | |||||||| ||||    
T  41966915 aacagtttcaaatcattaattccttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatt 41966816  T
Q  370 ctgccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaa 435  Q
       |||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||    
T  41966815 taaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaa 41966750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 41967236 - 41967132
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgacctttta-acagagtttaaatagatatatcatatgatcggtc 112  Q
    ||||| || |||| || ||||||||||||  || || ||||||||||||||||||| |||||| | | ||||||||| || || |||  |||||| ||||    
T  41967236 aggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatgatgggtc 41967137  T
Q  113 cattg 117  Q
    |||||    
T  41967136 cattg 41967132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 435
Target Start/End: Original strand, 37462447 - 37462586
Alignment:
Q  296 caacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccag 395  Q
    ||||| |||| |||||||||| || ||||||  |||| ||||||||| |||||||||| | |||||||||||||   ||| |||| |||||||||||||     
T  37462447 caacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttacaccaa 37462546  T
Q  396 ctatctctacatccatattctttcatcatccaaacatcaa 435  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  37462547 ctatctctagatccatattctttcatcacccaaacatcaa 37462586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 37462098 - 37462205
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgacctttta--acagagtttaaatagatatatcatatgatcggt 111  Q
    |||||||||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||  | |||  |||| || |||||||||||||| |||    
T  37462098 aggtagagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggt 37462197  T
Q  112 ccattgaa 119  Q
    ||| ||||    
T  37462198 ccaatgaa 37462205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 280
Target Start/End: Original strand, 37462306 - 37462410
Alignment:
Q  179 aggtgatacaagacttccaacacaaatcatggc---ttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaac 275  Q
    |||||||||||||||| ||||||||||||| ||   |  ||  |||||||||| ||||| || | |||||||||||||||||||   |||||||||||||    
T  37462306 aggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaac 37462405  T
Q  276 agctt 280  Q
    |||||    
T  37462406 agctt 37462410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 39427680 - 39427740
Alignment:
Q  375 aaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaa 435  Q
    |||||||| | ||||||||| |||| |||| |||||||||||||||||| |||||||||||    
T  39427680 aaagtaaacaatttacaccaactatatctatatccatattctttcatcacccaaacatcaa 39427740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 180 - 436
Target Start/End: Original strand, 26574700 - 26574959
Alignment:
Q  180 ggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagct 279  Q
    |||| |||||||||||||||||||||||| || | ||| |||| | ||  | |||||| |  ||||||||| | |||||  | ||||||||||||||| |    
T  26574700 ggtggtacaagacttccaacacaaatcatagcgtcatccaaatcaagatcttcttgaaaatgactaacttgattactctccaaatcataccaaaacagat 26574799  T
Q  280 tctcaggatctacttgcaacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggt---gaaacacgattctgccaa 376  Q
    || ||  ||||||   ||||| |||| |  |||||||  | |||||| ||||||||||||||| || || ||||||      |||||||||||   |||     
T  26574800 tcacaacatctaccctcaacaaaaccttttttccatcaatggaataacctaaaagcctcaaagattccacaggtaaatcatcgaaacacgatttaaccac 26574899  T
Q  377 agtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaat 436  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  26574900 agtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacatcaat 26574959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 561019 - 561121
Alignment:
Q  174 aaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaa 273  Q
    |||||||||| || ||| ||||||||| |||||||  ||| || || ||||||||||||| |||||||  || ||  || ||| ||||||||||||||||    
T  561019 aaggaaggtggtagaaggcttccaacataaatcataactttattgatattaggaattcctggaacacaggtagctcttttacttttgagatcataccaaa 561118  T
Q  274 aca 276  Q
    |||    
T  561119 aca 561121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 26574525 - 26574584
Alignment:
Q  15 ggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgacct 74  Q
    |||| |||| ||||| ||||||||||||| || || ||| ||||||||||||||||||||    
T  26574525 ggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaatttgacct 26574584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 561273 - 561319
Alignment:
Q  389 acaccagctatctctacatccatattctttcatcatccaaacatcaa 435  Q
    |||||| ||||||||| |||||||||||||||| | |||||||||||    
T  561273 acaccaactatctctaaatccatattctttcattacccaaacatcaa 561319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 296 - 458
Target Start/End: Original strand, 45243657 - 45243819
Alignment:
Q  296 caacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccag 395  Q
    |||||||||  |||||| ||| |||||||||  |||| ||||||||| || |||| | ||  ||||||||||||   ||||||||||||||||||||||     
T  45243657 caacagaactttacttcgatcactcgaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaa 45243756  T
Q  396 ctatctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattcaca 458  Q
     |||||||| | |||||||||||||||| |||||||||||| | |  ||||||||||||||||    
T  45243757 atatctctagaaccatattctttcatcacccaaacatcaatttcattagtttgataattcaca 45243819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 436
Target Start/End: Original strand, 45237908 - 45238048
Alignment:
Q  296 caacagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccag 395  Q
    |||||||||  |||||| |||||| ||||||  |||| |||||||   ||||| | | ||  |||||||||||||  | ||||||||||||||||||||     
T  45237908 caacagaactttacttcgatcgcttgaataacataaaggcctcaacaatttcagatgaaaattgaaacacgattcaactaaagtaaaaagtttacaccaa 45238007  T
Q  396 ctatctctacatccatattctttcatcatccaaacatcaat 436  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  45238008 ctatctctagatccatattctttcatcacccaaacatcaat 45238048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 45230244 - 45230351
Alignment:
Q  174 aaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaa 273  Q
    ||||| ||||||||||| ||| || ||||||||||  ||| || |||| |||||||||||||||||  | |||||||||||||||||| |||||||||||    
T  45230244 aaggatggtgatacaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaa 45230343  T
Q  274 acagcttc 281  Q
    ||||||||    
T  45230344 acagcttc 45230351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 45243505 - 45243613
Alignment:
Q  174 aaggaaggtgatac-aagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    |||||||||||||| ||| ||| || ||||||||||  ||| || |||| ||||||||||||||||| || ||| ||||||||| |||||||||||||||    
T  45243505 aaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttgttcactgttgagatcataccaa 45243604  T
Q  273 aacagcttc 281  Q
    |||||||||    
T  45243605 aacagcttc 45243613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 458
Target Start/End: Original strand, 45230467 - 45230555
Alignment:
Q  373 ccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaa---catcaatgttaacagtttgataattcaca 458  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||||| |||||   ||||||| |||  ||||||||||||||||    
T  45230467 ccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcatcaattttattagtttgataattcaca 45230555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 45237761 - 45237869
Alignment:
Q  173 gaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaa 272  Q
    ||||||||||| |||||| ||| || ||||||||||  ||| ||  ||| ||||||||||| ||||| || ||||||||||| ||||||| |||||||||    
T  45237761 gaaggaaggtggtacaaggctttcagcacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcataccaa 45237860  T
Q  273 aacagcttc 281  Q
    |||| ||||    
T  45237861 aacaacttc 45237869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 458
Target Start/End: Original strand, 4432 - 4591
Alignment:
Q  299 cagaaccatacttccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagcta 398  Q
    ||||||| |||||||||| || ||||||  |||| | ||| ||| ||||||| || | |||| ||||||||    || |||||||||||||||||| |||    
T  4432 cagaaccttacttccatcactagaataacataaaggactcgaagatttcaaatgtgaagtgacacacgatttcatcatagtaaaaagtttacaccaacta 4531  T
Q  399 tctctacatccatattctttcatcatccaaacatcaatgttaacagtttgataattcaca 458  Q
    ||| |  ||||||||| |||||||| |||||||||||| |||  ||||| ||||||||||    
T  4532 tcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcataattcaca 4591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 4289 - 4394
Alignment:
Q  174 aaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaa 273  Q
    |||||||||| |||||||||||||||||||||| | |||  || ||||| ||||||| |||   || |||||||||||||| |||| | |||||||||||    
T  4289 aaggaaggtggtacaagacttccaacacaaatcttagctccattgaaatcaggaatttctt---cataactaacttgttcagtcttcaaatcataccaaa 4385  T
Q  274 acagcttct 282  Q
    |||||||||    
T  4386 acagcttct 4394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 4073 - 4179
Alignment:
Q  14 aggtagagacttcaaaataattagagaatcattgtcgtataataagaattcaatttgacctttta--acagagtttaaatagatatatcatatgatcggt 111  Q
    ||||||||| |||||| |||||| |||||| || || |||||||||||||||||||||  |||||  ||||||||||| || ||| |||||||||| |||    
T  4073 aggtagagaattcaaagtaattatagaatccttttcctataataagaattcaatttga-gttttagcacagagtttaactaaataaatcatatgatgggt 4171  T
Q  112 ccattgaa 119  Q
    ||||||||    
T  4172 ccattgaa 4179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 435
Target Start/End: Original strand, 36224454 - 36224515
Alignment:
Q  374 caaagtaaaaagtttacaccagctatctctacatccatattctttcatcatccaaacatcaa 435  Q
    ||||||||| | ||||||||| ||||||||| |||||||||||||||||| |||||||||||    
T  36224454 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 36224515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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