View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_low_17 (Length: 460)
Name: NF15655_low_17
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 217 - 447
Target Start/End: Complemental strand, 28389290 - 28389058
Alignment:
| Q |
217 |
gtgatgctaaactaccatactatatatatgtggttgataattttgggaattttaacttgaaaggaaatttttggtcnnnnnnnngaa--gaaacaagaaa |
314 |
Q |
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| T |
28389290 |
gtgatgctaaactaccatactatatatatgtggttgataactttgggaattttaacttgaaaggaaatttttggtcaaaaaaaaaaaaagaaacaagaaa |
28389191 |
T |
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| Q |
315 |
gggaattttgaaaggcatggactaactttagaacacaaatgtattaacttccttcatgaaagaacaaatgaccagagannnnnnnncttctttatttctt |
414 |
Q |
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| T |
28389190 |
gggaattttgaaaggcatggactaactttagaacacaaatgtattaacttccttcatgaaagaacaaatgaccagagattttttttcttctttatttctt |
28389091 |
T |
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| Q |
415 |
cctatgaattgtttgtgattctattctctcttc |
447 |
Q |
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| T |
28389090 |
cctatgaattgtttgtgattctattctctcttc |
28389058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 28389482 - 28389364
Alignment:
| Q |
18 |
ctattaaactactataccatatataaatatgatgataattaaaagaatttcaacaagaaaggaaatttttaaagacatggacgaaccttagaatataaat |
117 |
Q |
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| T |
28389482 |
ctattaaactactataccatatataaatatgatgataattaaaagaatttcaacaagaaaagaaatttttaaagacatggacgaaccttagaatataaat |
28389383 |
T |
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| Q |
118 |
gtattaattttcttcatgg |
136 |
Q |
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| T |
28389382 |
gtattaattttcttcatgg |
28389364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 28379840 - 28379724
Alignment:
| Q |
18 |
ctattaaactactataccatatataaatatgatgataattaaaagaatttcaacaagaaaggaaatttttaaagacatggacgaaccttagaata---ta |
114 |
Q |
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| T |
28379840 |
ctattaaactaccataccatatataaatgtaatgataattaaaagaatttcaacaagaaaggaaat-----aagacatggacgaaccttagaatatacta |
28379746 |
T |
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| Q |
115 |
aatgtattaattttcttcatgg |
136 |
Q |
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| T |
28379745 |
aatgtattaattttcttcatgg |
28379724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 28415129 - 28415202
Alignment:
| Q |
49 |
atgataattaaaagaatttcaacaagaaaggaaatttttaaagacatggacgaaccttagaatataaatgtatt |
122 |
Q |
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| T |
28415129 |
atgataattaaacgaattttaacaagaaaggaaattttgaaatgtatggacgaaccttagaatacaaatgtatt |
28415202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 28389199 - 28389133
Alignment:
| Q |
69 |
aacaagaaaggaaatttttaaagacatggacgaaccttagaatataaatgtattaattttcttcatg |
135 |
Q |
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| T |
28389199 |
aacaagaaagggaattttgaaaggcatggactaactttagaacacaaatgtattaacttccttcatg |
28389133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 28415149 - 28415202
Alignment:
| Q |
306 |
aacaagaaagggaattttgaaaggcatggactaactttagaacacaaatgtatt |
359 |
Q |
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| T |
28415149 |
aacaagaaaggaaattttgaaatgtatggacgaaccttagaatacaaatgtatt |
28415202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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