View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_low_18 (Length: 455)
Name: NF15655_low_18
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 331 - 439
Target Start/End: Original strand, 32007525 - 32007635
Alignment:
| Q |
331 |
tagatttaatttg--ttgtgttctacaaaagaatattattgcatttaacaagtgtttctcaaatcaaatcaaagtactacaactcttgttgagtgtatta |
428 |
Q |
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| T |
32007525 |
tagatttaatttgctttgtgttctacaaaagaatattattgcatttaacaagtgtttctcaaatcaaatcaaagtactacaactcttgttgagtgtatta |
32007624 |
T |
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| Q |
429 |
gcaacacttgt |
439 |
Q |
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| T |
32007625 |
gcaacacttgt |
32007635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 32007393 - 32007493
Alignment:
| Q |
199 |
aataaatgtgaaatattatgccaagttgcttaaaatacaatcaatcaatcttggagtattggaaaacaaaataatgtccattcttcaacgagggttgttt |
298 |
Q |
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| T |
32007393 |
aataaatgtgaaatattatgccaagttgcttaaaatacaatcaatcaatcttggagtattggaaaacaaaataatgtccattcttcaaggagggttgttt |
32007492 |
T |
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| Q |
299 |
g |
299 |
Q |
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| T |
32007493 |
g |
32007493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 42115856 - 42115990
Alignment:
| Q |
19 |
ctgtttcgccttcatcactgtcttttcttttaataaatttccgtccatctcccaacagtgaatccaacaaccccataacaaccaagtttattcatggact |
118 |
Q |
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| T |
42115856 |
ctgtttctcctgcatcactgtcttttcttttgataaattttcgtccatctcccaacagtgaatccaacaatcccataacaaccaagcttattcatgggc- |
42115954 |
T |
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| Q |
119 |
taattagatcacatatttaatctaaattcttatttatta |
157 |
Q |
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| T |
42115955 |
---atagatcacatatttaatctaaatgtttatttatta |
42115990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 173 - 292
Target Start/End: Original strand, 42116043 - 42116163
Alignment:
| Q |
173 |
acagaattgcaaattttaaagtgtcaaataaatgtgaaatattatgccaagttgcttaaaatacaatcaatcaatcttggagtattgga-aaacaaaata |
271 |
Q |
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||||||||||||| | |||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
42116043 |
acagaattgcaaaggtaaaagggtcatataaatgtgaattattatgccaagtttcttaaaatacaatcaatcaatcttggagtatcatataaacaaaata |
42116142 |
T |
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| Q |
272 |
atgtccattcttcaacgaggg |
292 |
Q |
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| T |
42116143 |
atgtccattcttcaaggaggg |
42116163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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