View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_low_19 (Length: 438)
Name: NF15655_low_19
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 48251767 - 48252153
Alignment:
| Q |
17 |
gaaagtagccatatacgcgttaatatatatgcaatgtggctatattacaaaccatatgattaagagtctgaaattcttctatatgctatgcgtgtcgtgt |
116 |
Q |
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| T |
48251767 |
gaaagtagccatatacgcgttaatat----gcaatgtggctatattacaaaccatatgattaagagcctgaaattcttctatatgctatgcgtgtcgtgt |
48251862 |
T |
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| Q |
117 |
tgtcaaagtcggttcctccaaacacggtagtgtttgctaacattttttatactttgtccaaatacatgatccatagtttgccactcccttaaataactta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48251863 |
tgtcaaagtcggttcctccaaacacggtagtgtttgctaacattttttatactttgtccaaatacatgatccatagtttgccactcccttaaataactta |
48251962 |
T |
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| Q |
217 |
attttaattaatcgtaatggaatgtccttcattgtttctatcgtttatccctttttatgaaagaccttcattgtttattgaagttgcatgtgtttgtttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48251963 |
attttaattaatcgtaatggaatgtccttcattgtttctatcgtttatccctttttatgaaagaccttcattgtttattgaagttgcatgtgtttgtttg |
48252062 |
T |
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| Q |
317 |
caacttaatcggtactgctttttactttcaacggatgaaacgagttaaataaaactatattattaattgccgttattctagtttgcaagaa |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48252063 |
caacttaatcggtactgctttttactttcaacggatgaaacgagttaaataaaactatattattaattgccgttattctagtttgcaagaa |
48252153 |
T |
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