View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15655_low_21 (Length: 397)

Name: NF15655_low_21
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15655_low_21
NF15655_low_21
[»] chr6 (9 HSPs)
chr6 (1-386)||(31564316-31564711)
chr6 (127-291)||(33416366-33416536)
chr6 (248-377)||(33385707-33385837)
chr6 (303-362)||(33281320-33281376)
chr6 (1-90)||(33385581-33385670)
chr6 (3-90)||(33259872-33259959)
chr6 (320-374)||(33416538-33416592)
chr6 (303-362)||(33301947-33302003)
chr6 (3-67)||(24631864-24631928)
[»] chr5 (2 HSPs)
chr5 (128-282)||(30653203-30653360)
chr5 (9-60)||(11457158-11457209)
[»] chr2 (3 HSPs)
chr2 (245-374)||(17443374-17443503)
chr2 (25-90)||(17443537-17443602)
chr2 (44-96)||(43199930-43199982)
[»] scaffold0428 (2 HSPs)
scaffold0428 (3-90)||(3960-4047)
scaffold0428 (303-362)||(12876-12932)
[»] chr7 (1 HSPs)
chr7 (9-60)||(3468674-3468725)
[»] chr3 (1 HSPs)
chr3 (9-60)||(43115116-43115167)
[»] chr1 (1 HSPs)
chr1 (11-62)||(15581316-15581367)
[»] chr8 (1 HSPs)
chr8 (6-62)||(13000381-13000437)


Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 31564711 - 31564316
Alignment:
Q  1 aacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatcaatccacaag 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  31564711 aacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcacaagtgctaatatgagtgtataagttcaaatatatcaatccacaag 31564612  T
Q  101 aggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctcttttacat------gtaaaaattgaaatacatgtataaattcaaat 194  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||      ||||||||||||||||||||||||||||||||    
T  31564611 aggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacatgtaaaaattgaaatacatgtataaattcaaat 31564512  T
Q  195 ctgtctaacatatttacttctattagatgtagaaaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctttgtctgaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  31564511 ctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatgaaattgaaaccattactcgagcctttgtctgaa 31564412  T
Q  291 gaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgtactaccacaggt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564411 gaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgtactaccacaggt 31564316  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
Q  127 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 224  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  225 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag 291  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||  |||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag 33416536  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 248 - 377
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  248 aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 346  Q
    |||||||||||||||| |||| || ||| ||||||  ||||| |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  347 aattgcaacttcttcatcttcaacttgtact 377  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  303 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 362  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 33385581 - 33385670
Alignment:
Q  1 aacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 90  Q
    ||||||| ||||||||||||  | ||||||||| |||||||| ||||||| ||||||||||| |||| | |  |||||||||||| ||||    
T  33385581 aacttttatggacatgtcatgagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaatgcatc 33385670  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 33259872 - 33259959
Alignment:
Q  3 cttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 90  Q
    ||||| ||||||||||||| |  |||||||| |||||||| ||||||| |  |||||||| |||| | | ||||||||||||||||||    
T  33259872 cttttatggacatgtcattagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttcaaatacatc 33259959  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  320 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 374  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  303 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 362  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 24631928 - 24631864
Alignment:
Q  3 cttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatat 67  Q
    ||||| ||||||| ||||  ||||||||||| |||||||| ||| ||| ||||||||||| ||||    
T  24631928 cttttatggacatatcatgagttgtttccataaactcttccaaatagtttcacaagtgcttatat 24631864  T

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Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 128 - 282
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  128 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 227  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  228 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 282  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 11457158 - 11457209
Alignment:
Q  9 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 60  Q
    ||||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11457158 tggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 374
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  245 agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 344  Q
    ||||||||||||||||||| |||| ||  || ||||||  |||||||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  345 gcaattgcaacttcttcatcttcaacttgt 374  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  25 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 90  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 43199930 - 43199982
Alignment:
Q  44 aaacagtctcacaagtgctaatatgactgtataagttcaaatacatcaatcca 96  Q
    ||||||||||||||||||| |||||| |  ||||||||||||| || ||||||    
T  43199930 aaacagtctcacaagtgcttatatgagtagataagttcaaataaatgaatcca 43199982  T

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Target: scaffold0428 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 3960 - 4047
Alignment:
Q  3 cttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 90  Q
    ||||| ||||||||||||  |  |||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  3960 cttttatggacatgtcatgagccgtttccataaactcttccaaacagtctcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

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Target: scaffold0428; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 362
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  303 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 362  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 3468674 - 3468725
Alignment:
Q  9 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 60  Q
    ||||||||||||| ||||||||||  |||||| ||||||||||||| |||||    
T  3468674 tggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtg 3468725  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 43115116 - 43115167
Alignment:
Q  9 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 60  Q
    ||||||||||||  ||||||||||| |||||||| ||||| |||||||||||    
T  43115116 tggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtg 43115167  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 15581316 - 15581367
Alignment:
Q  11 gacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 62  Q
    ||||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 13000437 - 13000381
Alignment:
Q  6 ttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 62  Q
    |||||||||||||||  |||||| |||| |||||||  ||| |||||||||||||||    
T  13000437 ttgtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgct 13000381  T

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