View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15655_low_27 (Length: 352)

Name: NF15655_low_27
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15655_low_27
NF15655_low_27
[»] chr2 (14 HSPs)
chr2 (32-189)||(15492686-15492843)
chr2 (252-336)||(15492028-15492112)
chr2 (85-151)||(45651015-45651081)
chr2 (88-153)||(14803066-14803131)
chr2 (84-151)||(40255519-40255586)
chr2 (80-153)||(7833315-7833388)
chr2 (85-146)||(9002456-9002517)
chr2 (80-153)||(14803075-14803148)
chr2 (80-140)||(43893935-43893995)
chr2 (95-153)||(27328277-27328335)
chr2 (80-157)||(39118043-39118120)
chr2 (96-161)||(41153169-41153234)
chr2 (78-168)||(35728481-35728573)
chr2 (80-112)||(41120030-41120062)
[»] chr1 (13 HSPs)
chr1 (80-156)||(15285478-15285554)
chr1 (80-151)||(15444311-15444382)
chr1 (84-158)||(49944879-49944953)
chr1 (79-161)||(50155339-50155421)
chr1 (84-168)||(38040293-38040378)
chr1 (80-140)||(48377832-48377892)
chr1 (90-168)||(15342989-15343068)
chr1 (89-155)||(47419958-47420024)
chr1 (96-168)||(44939124-44939197)
chr1 (96-160)||(26070850-26070914)
chr1 (96-167)||(34332494-34332566)
chr1 (78-168)||(47912834-47912923)
chr1 (89-153)||(50105689-50105753)
[»] chr6 (11 HSPs)
chr6 (85-153)||(7384778-7384846)
chr6 (81-152)||(30732411-30732481)
chr6 (84-153)||(24985965-24986034)
chr6 (78-151)||(7649834-7649907)
chr6 (84-152)||(7649845-7649913)
chr6 (84-158)||(27909021-27909095)
chr6 (79-152)||(2284817-2284890)
chr6 (84-153)||(20703433-20703502)
chr6 (84-140)||(1158291-1158347)
chr6 (96-152)||(2740062-2740117)
chr6 (81-125)||(29028849-29028893)
[»] chr8 (7 HSPs)
chr8 (78-171)||(8688351-8688441)
chr8 (80-153)||(6354689-6354762)
chr8 (84-140)||(27789325-27789381)
chr8 (96-161)||(8793744-8793809)
chr8 (80-152)||(14067271-14067343)
chr8 (84-152)||(29802898-29802966)
chr8 (103-139)||(41374272-41374308)
[»] chr5 (11 HSPs)
chr5 (78-152)||(1420691-1420765)
chr5 (80-168)||(5002157-5002246)
chr5 (82-151)||(15969103-15969172)
chr5 (97-171)||(14107539-14107614)
chr5 (108-161)||(8235447-8235500)
chr5 (96-161)||(14913164-14913229)
chr5 (84-168)||(18473521-18473606)
chr5 (80-149)||(36409676-36409745)
chr5 (84-140)||(1899502-1899558)
chr5 (82-150)||(4409365-4409433)
chr5 (84-140)||(4409375-4409431)
[»] chr4 (19 HSPs)
chr4 (80-158)||(45096616-45096694)
chr4 (80-140)||(31372907-31372967)
chr4 (80-150)||(29910596-29910666)
chr4 (96-161)||(16412259-16412324)
chr4 (80-161)||(27952505-27952586)
chr4 (80-161)||(43117896-43117977)
chr4 (84-156)||(4698669-4698741)
chr4 (78-158)||(17284763-17284843)
chr4 (84-151)||(20114105-20114172)
chr4 (84-139)||(22235303-22235358)
chr4 (84-151)||(26066415-26066482)
chr4 (96-161)||(30191921-30191986)
chr4 (96-161)||(45828473-45828538)
chr4 (96-161)||(48361077-48361142)
chr4 (86-151)||(52072799-52072864)
chr4 (84-140)||(26165944-26166000)
chr4 (84-140)||(32645536-32645592)
chr4 (84-156)||(36866883-36866955)
chr4 (80-152)||(48601146-48601217)
[»] chr3 (13 HSPs)
chr3 (81-151)||(43915281-43915351)
chr3 (84-151)||(32711237-32711304)
chr3 (84-151)||(32711248-32711315)
chr3 (84-158)||(19649625-19649699)
chr3 (78-151)||(653277-653350)
chr3 (84-153)||(48593188-48593257)
chr3 (81-171)||(8036546-8036637)
chr3 (84-151)||(48593177-48593244)
chr3 (80-153)||(2312959-2313032)
chr3 (88-153)||(8987762-8987827)
chr3 (78-151)||(35747330-35747403)
chr3 (88-153)||(52532712-52532777)
chr3 (84-156)||(28406497-28406569)
[»] chr7 (16 HSPs)
chr7 (78-152)||(40324682-40324756)
chr7 (84-168)||(11668032-11668117)
chr7 (84-153)||(40364613-40364682)
chr7 (79-161)||(2610212-2610294)
chr7 (82-152)||(3230764-3230833)
chr7 (106-148)||(47708546-47708588)
chr7 (106-148)||(47718542-47718584)
chr7 (80-153)||(5761787-5761860)
chr7 (96-161)||(8566139-8566204)
chr7 (80-168)||(30869228-30869317)
chr7 (96-161)||(32549875-32549940)
chr7 (103-152)||(40364645-40364694)
chr7 (108-152)||(27094973-27095017)
chr7 (108-152)||(27183286-27183330)
chr7 (88-152)||(28954025-28954089)
chr7 (80-152)||(47140244-47140316)
[»] scaffold0128 (1 HSPs)
scaffold0128 (81-152)||(44091-44162)
[»] scaffold0123 (1 HSPs)
scaffold0123 (78-145)||(28130-28197)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 15492843 - 15492686
Alignment:
Q  32 attatacttcctcaggtatctatttaagaaaagatacannnnnnnnaaatttattgaataatttatgtatctggtctatattatagatcaaataaatcag 131  Q
    ||||||||||||| ||||||||||||||||||||||||        ||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  15492843 attatacttcctccggtatctatttaagaaaagatacattttttttaaatttattgaataatttatgtatctaacctatattatagatcaaataaatcag 15492744  T
Q  132 ttattcaatcaatctaaaaaatcaaattttcttataatagcaattggatggagtatat 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15492743 ttattcaatcaatctaaaaaatcaaattttcttataatagcaattggatggagtatat 15492686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 252 - 336
Target Start/End: Complemental strand, 15492112 - 15492028
Alignment:
Q  252 attttaacattttcatatatggcccgcattagacacaacacacctaccatgacatgcattttcgctaggcaagagtgggtatatc 336  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15492112 attttaacattttcatatatgggctgcattagacacaacacacctaccatgacatgcattttcgctaggcaagagtgggtatatc 15492028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 45651081 - 45651015
Alignment:
Q  85 ttgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    |||||||||| ||||||||||||||||||||||| || ||  |||||||||||||| || |||||||    
T  45651081 ttgaataattgatgtatctggtctatattatagaacagattcatcagttattcaataaacctaaaaa 45651015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 14803131 - 14803066
Alignment:
Q  88 aataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    ||||||| |||||| || |||||||||||||||||||| |||| |||||| || ||||||||||||    
T  14803131 aataattgatgtatttgatctatattatagatcaaatacatcaattattctataaatctaaaaaat 14803066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 40255519 - 40255586
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    |||||||||||||| ||| | || |||||||| |||||||||  ||||||||||||| ||||||||||    
T  40255519 attgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaa 40255586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 7833388 - 7833315
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    ||||||| |||| || ||||||||| |||||||| || |||| ||| |||| ||||||||| ||||||||||||    
T  7833388 atttattaaatagttaatgtatctgatctatattttaaatcagatacatcaattattcaatgaatctaaaaaat 7833315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 9002517 - 9002456
Alignment:
Q  85 ttgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatct 146  Q
    |||||||||| || ||| |||||||||||||| |||||||| || ||||||||||| |||||    
T  9002517 ttgaataattgatatatttggtctatattatatatcaaatacataagttattcaatgaatct 9002456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 14803075 - 14803148
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    |||||| |||||||| |||||| || |||||| ||||||||||||| |||| ||||| | | ||||||||||||    
T  14803075 atttatagaataattgatgtatttgatctataatatagatcaaatacatcaattattaattaaatctaaaaaat 14803148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 43893995 - 43893935
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaat 140  Q
    |||||||||||||||||||||| ||||||||||| ||  ||  ||| ||||||||||||||    
T  43893995 atttattgaataatttatgtatttggtctatattttaagtcggatacatcagttattcaat 43893935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 27328335 - 27328277
Alignment:
Q  95 tatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    ||||||| |||||||||||||||||||  || |||| ||||||||| ||| ||||||||    
T  27328335 tatgtatgtggtctatattatagatcacgtacatcatttattcaatgaatataaaaaat 27328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 39118120 - 39118043
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaa 157  Q
    |||||||| |||| |||||||| ||||||||||| ||||| | ||| |||| ||| |||||  ||||||||| |||||    
T  39118120 atttattgtataaattatgtatttggtctatattctagataagatatatcaattactcaatggatctaaaaattcaaa 39118043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 41153169 - 41153234
Alignment:
Q  96 atgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    |||||| |||||||||||||| | |||||| |||| ||| ||||| |||||||||| |||| ||||    
T  41153169 atgtatttggtctatattataaaccaaatacatcaattactcaatgaatctaaaaagtcaactttt 41153234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 35728573 - 35728481
Alignment:
Q  78 aaatttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa-atcaaat-tttcttataa 168  Q
    ||||| ||||||||||| |||||||| || || | |||||| |||||| |||| |||| |||| |||| ||||| ||||||| ||||||||||    
T  35728573 aaattcattgaataattgatgtatcttgtttagaatatagaccaaatatatcatttatgcaatgaatcaaaaaagatcaaatatttcttataa 35728481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 41120062 - 41120030
Alignment:
Q  80 atttattgaataatttatgtatctggtctatat 112  Q
    ||||||||||||||| |||||||||||||||||    
T  41120062 atttattgaataattaatgtatctggtctatat 41120030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 15285478 - 15285554
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaa 156  Q
    ||||||||||||||| ||||||||| || |||||  |||||||||| |||| |||||||||||||||||||||||||    
T  15285478 atttattgaataattgatgtatctgatccatattcaagatcaaatacatcaattattcaatcaatctaaaaaatcaa 15285554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 15444311 - 15444382
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    |||||| |||||| | ||||||||  |||||||||||||||||||| ||||||||||| || ||||||||||    
T  15444311 atttatcgaataaatgatgtatctaatctatattatagatcaaatatatcagttattccataaatctaaaaa 15444382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 49944879 - 49944953
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaat 158  Q
    ||||||||||| |||||||| ||||| | |||||| |||||| |||| |||| |||| |||| ||||||||||||    
T  49944879 attgaataattgatgtatcttgtctagaatatagaccaaatacatcatttatacaatgaatcaaaaaaatcaaat 49944953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 50155339 - 50155421
Alignment:
Q  79 aatttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    |||| |||| |||| | |||||| |||||||||||||||| |||||| |||| ||| ||||| |||||||||| |||| ||||    
T  50155339 aattcattgcataaatgatgtatttggtctatattatagaccaaatacatcaattactcaatgaatctaaaaagtcaactttt 50155421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 38040378 - 38040293
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaat-tttcttataa 168  Q
    ||||| ||||| |||||||| ||||| | ||||||||||||| |||| |||| |||| |||| ||||| |||||| ||||||||||    
T  38040378 attgattaattgatgtatcttgtctagaatatagatcaaatatatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataa 38040293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 48377832 - 48377892
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaat 140  Q
    ||||||||||||||| |||||| | |||||||||||| ||||||||  ||| |||||||||    
T  48377832 atttattgaataattgatgtatttagtctatattataaatcaaatacgtcacttattcaat 48377892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 15342989 - 15343068
Alignment:
Q  90 taatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaat-tttcttataa 168  Q
    ||||| |||||||| ||||| | |||||| |||||| |||| |||| |||| |||| |||||||||||| ||||||||||    
T  15342989 taattaatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaatcaaaaaaatcaaatatttcttataa 15343068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 47419958 - 47420024
Alignment:
Q  89 ataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatca 155  Q
    |||||| |||||| |||| |||||||||||||| ||| |||  ||||||||| ||| ||||||||||    
T  47419958 ataattaatgtatatggtttatattatagatcatatacatcgattattcaatgaatttaaaaaatca 47420024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 44939124 - 44939197
Alignment:
Q  96 atgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaattt-tcttataa 168  Q
    |||||| ||||||||||| ||||| | ||| |||| ||| ||||| ||||||||||||||| ||| ||||||||    
T  44939124 atgtatttggtctatattctagattagatacatcaattactcaatgaatctaaaaaatcaattttctcttataa 44939197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 26070914 - 26070850
Alignment:
Q  96 atgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaattt 160  Q
    |||||| ||||||||||| ||||| | ||| |||| ||| ||||| |||||||||| ||||||||    
T  26070914 atgtatttggtctatattctagataagatacatcaattactcaatgaatctaaaaagtcaaattt 26070850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 34332566 - 34332494
Alignment:
Q  96 atgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaa-ttttcttata 167  Q
    |||||| ||||||||||| ||||  ||||| |||| ||| ||||| |||||||||| ||||| ||||||||||    
T  34332566 atgtatttggtctatattctagacaaaatacatcaattactcaatgaatctaaaaagtcaaagttttcttata 34332494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 47912923 - 47912834
Alignment:
Q  78 aaatttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaat-tttcttataa 168  Q
    |||||||||| |||||| |||||||| |||||   ||||||||||||| || | |||| |||| |||| ||||| |||||| ||||||||||    
T  47912923 aaatttattgtataattaatgtatcttgtctag--tatagatcaaatacattatttatacaataaatcaaaaaagtcaaatatttcttataa 47912834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 50105753 - 50105689
Alignment:
Q  89 ataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    |||||| |||||||| || |||||||||||||| ||| ||   ||||||||| ||||||||||||    
T  50105753 ataattaatgtatctagtttatattatagatcagatacattgattattcaatgaatctaaaaaat 50105689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 7384778 - 7384846
Alignment:
Q  85 ttgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    |||||||||| ||| |||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||    
T  7384778 ttgaataattgatgcatctagtctatattattgatcaaatacatcagttattcaaccaatctaaaaaat 7384846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 30732411 - 30732481
Alignment:
Q  81 tttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    |||||||||||||| |||||| ||||||| |||||||| |||||| |||||||||| ||| |||||||||||    
T  30732411 tttattgaataattgatgtatttggtcta-attatagaccaaatatatcagttatttaatgaatctaaaaaa 30732481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 24986034 - 24985965
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    |||| |||||| |||||| ||||||||| ||||||||||||| |||||||||||||| || || ||||||    
T  24986034 attggataattgatgtatatggtctataatatagatcaaatacatcagttattcaatgaacctcaaaaat 24985965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 7649907 - 7649834
Alignment:
Q  78 aaatttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    ||||| ||||||||||| || ||| |||| |||||| |||| |||||| |||| ||||||||| ||||||||||    
T  7649907 aaattcattgaataattgatttatttggtatatattttagaccaaatacatcaattattcaatgaatctaaaaa 7649834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 7649845 - 7649913
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    ||||||||||| |||||| ||||||| | |||| | ||||||||||| ||||||||| ||| |||||||    
T  7649845 attgaataattgatgtatttggtctaaaatatataccaaataaatcaattattcaatgaatttaaaaaa 7649913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 27909021 - 27909095
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaat 158  Q
    ||||| ||||| ||||||| |||||| | ||||||||||||| |||| ||||||||| |||  ||||| ||||||    
T  27909021 attgagtaattgatgtatccggtctaaaatatagatcaaatacatcaattattcaatgaattaaaaaagtcaaat 27909095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 2284817 - 2284890
Alignment:
Q  79 aatttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    |||||||||||||||| ||||||||| | |||| ||||||||| ||| || | ||||| ||| || ||||||||    
T  2284817 aatttattgaataattaatgtatctgatttataatatagatcagatacattaattatttaataaacctaaaaaa 2284890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 20703502 - 20703433
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    |||||||| || |||||| |||||||||||||||| |||||| || |  |||||||| || |||||||||    
T  20703502 attgaatatttaatgtatttggtctatattatagaccaaatacattaaatattcaatgaacctaaaaaat 20703433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 1158291 - 1158347
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaat 140  Q
    ||||||||||| ||||||  |||||||||| |||| |||||| |||| |||||||||    
T  1158291 attgaataattaatgtattcggtctatattctagaccaaatacatcaattattcaat 1158347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 2740062 - 2740117
Alignment:
Q  96 atgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    |||||| || |||||||||||||| ||||| |||| ||||||||| |||||||||||    
T  2740062 atgtatttgttctatattatagataaaatacatca-ttattcaataaatctaaaaaa 2740117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 29028893 - 29028849
Alignment:
Q  81 tttattgaataatttatgtatctggtctatattatagatcaaata 125  Q
    |||||||||||||| |||||||||| ||||| ||||| |||||||    
T  29028893 tttattgaataattaatgtatctggactataatatagttcaaata 29028849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 8688351 - 8688441
Alignment:
Q  78 aaatttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaattttcttataatag 171  Q
    |||||||||||||||   |||||| ||| ||||||||||||||||||| |||| ||||||||| |||||||||||| |  ||| ||||||||||    
T  8688351 aaatttattgaataa---atgtatttggcctatattatagatcaaatacatcacttattcaataaatctaaaaaatgatttttgcttataatag 8688441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 6354689 - 6354762
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    ||||||||||||||| |||||| || | |||||| |||||| |||| || | ||||||||| ||||||||||||    
T  6354689 atttattgaataattaatgtatatgatatatattctagatcgaatacataaattattcaatgaatctaaaaaat 6354762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 27789325 - 27789381
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaat 140  Q
    ||||||||||| ||||||||||| |||| ||| || |||||| ||||||||||||||    
T  27789325 attgaataattgatgtatctggtatataatattgaccaaatacatcagttattcaat 27789381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 8793809 - 8793744
Alignment:
Q  96 atgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    |||||| | |||||||||||||| |||||| |||| ||| ||||| ||||||||| ||||| ||||    
T  8793809 atgtatttagtctatattatagaccaaatacatcaattactcaatgaatctaaaatatcaactttt 8793744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 14067343 - 14067271
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    ||||||||||||||| ||| || || ||||||||||| |||| ||| || |  |||||||| |||||||||||    
T  14067343 atttattgaataattgatgcatgtgatctatattataaatcagatacattaaatattcaattaatctaaaaaa 14067271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 29802898 - 29802966
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    |||||||||||  | ||||| || ||||||||| |||||||| ||||| |||||||| ||||| |||||    
T  29802898 attgaataattgttttatcttgtttatattataaatcaaatacatcagatattcaataaatctgaaaaa 29802966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 41374308 - 41374272
Alignment:
Q  103 tggtctatattatagatcaaataaatcagttattcaa 139  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  41374308 tggtctataatatagatcaaataaatcaattattcaa 41374272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 1420765 - 1420691
Alignment:
Q  78 aaatttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    ||||||||| ||||||| ||||||||  ||||||||||||| |||||| || |||| |||||| |||||||||||    
T  1420765 aaatttatttaataattgatgtatcttatctatattatagaccaaatacataagttgttcaataaatctaaaaaa 1420691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 5002246 - 5002157
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaat-tttcttataa 168  Q
    ||||||||| ||||| |||||||| ||||| | ||||||||||||| |||| |||| |||| |||| ||||| |||||| ||||||||||    
T  5002246 atttattgagtaattgatgtatcttgtctaaaatatagatcaaatacatcatttatgcaattaatcaaaaaagtcaaatgtttcttataa 5002157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 15969172 - 15969103
Alignment:
Q  82 ttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    ||||||||||| | |||||| ||||||||||||||||||| ||| ||||  ||||||||  |||||||||    
T  15969172 ttattgaataactgatgtatatggtctatattatagatcagatatatcaagtattcaatgcatctaaaaa 15969103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 14107614 - 14107539
Alignment:
Q  97 tgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt-cttataatag 171  Q
    ||||||| ||||||||||||||  |||||||||| ||||||||| ||| | ||||||  |||||| ||||||||||    
T  14107614 tgtatctcgtctatattatagactaaataaatcatttattcaatgaatttgaaaaatagaattttgcttataatag 14107539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 8235447 - 8235500
Alignment:
Q  108 tatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    ||||||||||| |||||| || | ||||||||| ||||||||||||||| ||||    
T  8235447 tatattatagaccaaatatattaattattcaataaatctaaaaaatcaattttt 8235500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 14913164 - 14913229
Alignment:
Q  96 atgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    |||||| ||||||||||| || |||||||| || | ||| ||||| ||| ||||||||||||||||    
T  14913164 atgtatttggtctatattttatatcaaatatattaattactcaatgaatttaaaaaatcaaatttt 14913229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 18473521 - 18473606
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaat-tttcttataa 168  Q
    ||||| ||||| |||||||| ||||| | ||||||||||||  |||| |||| |||| |||| ||||| |||||| ||||||||||    
T  18473521 attgagtaattgatgtatcttgtctagaatatagatcaaatgcatcatttatacaatgaatcaaaaaagtcaaatgtttcttataa 18473606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 36409676 - 36409745
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaa 149  Q
    ||||||||||||| | || ||| |||||||||| ||| |||| ||| |||| ||||||||| ||||||||    
T  36409676 atttattgaataaatgatatatgtggtctatatcatatatcacatacatcatttattcaatgaatctaaa 36409745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 1899502 - 1899558
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaat 140  Q
    ||||||||| || ||||||||||| |||||| ||| || ||| ||||||||||||||    
T  1899502 attgaataacttgtgtatctggtcaatattacagagcacatacatcagttattcaat 1899558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 4409433 - 4409365
Alignment:
Q  82 ttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaa 150  Q
    ||||||||||||| |||||| ||||||||| ||||||  ||||| |||| | ||||||| | |||||||    
T  4409433 ttattgaataattgatgtatttggtctataatatagactaaatacatcaataattcaattagtctaaaa 4409365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 4409375 - 4409431
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaat 140  Q
    ||||||| ||| |||||| | |||||||||||||| |||||| |||| |||||||||    
T  4409375 attgaattattgatgtatttagtctatattatagaccaaatacatcaattattcaat 4409431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 45096616 - 45096694
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaat 158  Q
    ||||||||||||||| |||||||| ||||| |||||||| |||||| |||| |||| |||| |||| ||||| ||||||    
T  45096616 atttattgaataattgatgtatcttgtctagattatagaccaaatatatcatttatgcaataaatcaaaaaagtcaaat 45096694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 31372907 - 31372967
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaat 140  Q
    ||||||||||||| | |||||||||  ||||||||||||||||||| |||| |||||||||    
T  31372907 atttattgaataaatgatgtatctgaactatattatagatcaaatatatcatttattcaat 31372967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 29910666 - 29910596
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaa 150  Q
    ||||||||||||||| |||||||| || |||||||||| ||||||  ||||  |||||||| |||||||||    
T  29910666 atttattgaataattgatgtatctagtatatattataggtcaaatgcatcaactattcaataaatctaaaa 29910596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 16412324 - 16412259
Alignment:
Q  96 atgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    |||||| ||||||||||| |||| |||||| |||| ||||||||| |||||||||| |||| ||||    
T  16412324 atgtatttggtctatattctagaccaaatatatcaattattcaatgaatctaaaaagtcaattttt 16412259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 27952505 - 27952586
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    |||||||||||||||||| ||| || | ||||||||||| |||||| |  ||||||||||  |||||||||| | |||||||    
T  27952505 atttattgaataatttatatatgtgatatatattatagaccaaatacaatagttattcaacaaatctaaaaattaaaatttt 27952586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 43117896 - 43117977
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    |||||||| |||| | |||||| ||||||||||| || | |||||| |||| ||||||||| ||| ||||||||||| ||||    
T  43117896 atttattgcataaatgatgtatttggtctatattttataccaaatacatcaattattcaatgaatgtaaaaaatcaattttt 43117977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 4698669 - 4698741
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaa 156  Q
    ||||||||||||||||||||||| || ||| |||| || ||| || | |||||||||  ||||||||||||||    
T  4698669 attgaataatttatgtatctggtttagattctagaccatatacataaattattcaatgtatctaaaaaatcaa 4698741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 17284843 - 17284763
Alignment:
Q  78 aaatttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaat 158  Q
    |||||||||| |||||| |||||||| ||||| | |||||| || ||| |||| |||| |||| |||| ||||||||||||    
T  17284843 aaatttattgtataattgatgtatcttgtctagaatatagaccacatacatcatttatgcaatgaatcaaaaaaatcaaat 17284763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 20114105 - 20114172
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    |||||||||||||||||| |||| || | |||||| || ||| || ||||||||||| ||||||||||    
T  20114105 attgaataatttatgtatttggtttagaatatagaccatatacattagttattcaattaatctaaaaa 20114172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 22235358 - 22235303
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaa 139  Q
    ||||||||| | ||||||||||| ||||||| |||||||||| |||| ||||||||    
T  22235358 attgaataactgatgtatctggtttatattaaagatcaaatatatcaattattcaa 22235303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 26066415 - 26066482
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    ||||||||||| ||||||| |||||| | |||||| || ||| |||||||||| ||| ||||||||||    
T  26066415 attgaataattgatgtatccggtctagaatatagaccagatacatcagttatttaatgaatctaaaaa 26066482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 30191986 - 30191921
Alignment:
Q  96 atgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    |||||| ||||||||||| ||||  ||||| |||| ||| ||||| ||||||||||||||| ||||    
T  30191986 atgtatttggtctatattctagacaaaatacatcaattactcaatgaatctaaaaaatcaattttt 30191921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 45828473 - 45828538
Alignment:
Q  96 atgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    |||||| |||| ||||||||||| |||||| || | ||| ||||| ||||||||||||||| ||||    
T  45828473 atgtatttggtttatattatagaccaaatacattaattactcaatgaatctaaaaaatcaattttt 45828538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 48361142 - 48361077
Alignment:
Q  96 atgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    |||||| ||||||||||| ||||  ||||| |||| ||| ||||| |||||||||| |||||||||    
T  48361142 atgtatttggtctatattctagacaaaatacatcaattactcaatgaatctaaaaagtcaaatttt 48361077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 52072799 - 52072864
Alignment:
Q  86 tgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    ||||||||| ||||||||  | ||||||||| || | ||| |||||||||||||| ||||||||||    
T  52072799 tgaataattgatgtatctaatatatattataaattagatacatcagttattcaattaatctaaaaa 52072864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 26165944 - 26166000
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaat 140  Q
    ||||||||| |||||||| | || ||||||||||| |||||| || |||||||||||    
T  26165944 attgaataacttatgtatattgtttatattatagaccaaatacattagttattcaat 26166000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 32645592 - 32645536
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaat 140  Q
    ||||||||||| |||||| ||||| |||| |||||  ||||| ||||||||||||||    
T  32645592 attgaataattgatgtatttggtcaatataatagactaaatacatcagttattcaat 32645536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 36866955 - 36866883
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaa 156  Q
    |||||||||||||||||  ||||||| | ||||||  ||||| |||| ||||||||| |||||| ||| ||||    
T  36866955 attgaataatttatgtacttggtctagaatatagacaaaatacatcaattattcaataaatctataaagtcaa 36866883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 48601146 - 48601217
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    ||||||||||||| | |||||||||  ||||||  || ||| ||||||| ||||||||||| |||||||||||    
T  48601146 atttattgaataactaatgtatctgacctatatg-taaatcgaataaattagttattcaatgaatctaaaaaa 48601217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 43915351 - 43915281
Alignment:
Q  81 tttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    |||||||||||| ||| ||||||| | |||||||||||| ||||| |||||| ||||||| ||||||||||    
T  43915351 tttattgaataaattaggtatctgatttatattatagattaaatatatcagtcattcaataaatctaaaaa 43915281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 32711304 - 32711237
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    ||||||||||| |||||||||||||||| |||||  |||||| |||| ||||||||| || |||||||    
T  32711304 attgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaacctaaaaa 32711237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 32711248 - 32711315
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    ||||||||||| |||||| ||| |||||||||||| || ||| |||| ||||||||| ||||||||||    
T  32711248 attgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatctaaaaa 32711315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 19649625 - 19649699
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaat 158  Q
    ||||||||||| |||||| | ||||||||| |||| | |||| |||| ||| ||||| |||||||||||||||||    
T  19649625 attgaataattgatgtatttagtctatattttagaccgaatacatcaattactcaatgaatctaaaaaatcaaat 19649699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 653277 - 653350
Alignment:
Q  78 aaatttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    ||||||||||||||||| |||||| ||||||| ||| ||||||||||| || | | |||||||  |||||||||    
T  653277 aaatttattgaataattgatgtatttggtctaaattttagatcaaatagataaatcattcaatatatctaaaaa 653350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 48593188 - 48593257
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    ||||||||||| ||||||| |||||| | |||||| |||||| || | ||||||||| ||||||||||||    
T  48593188 attgaataattgatgtatcgggtctagaatatagaccaaatacataaattattcaatgaatctaaaaaat 48593257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 8036637 - 8036546
Alignment:
Q  81 tttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaa-attttcttataatag 171  Q
    |||||||||||| |  | ||||||| |||||||||| |  ||||| |||||||||||||| || ||||||||| || |||| ||||||||||    
T  8036637 tttattgaataactagtttatctggactatattataaactaaatacatcagttattcaatgaacctaaaaaataaatatttgcttataatag 8036546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 48593244 - 48593177
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    |||||||||||||||||| ||||||||||| |||| |  ||| |||| |||||||||  |||||||||    
T  48593244 attgaataatttatgtatttggtctatattctagacccgatacatcaattattcaatgtatctaaaaa 48593177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 2312959 - 2313032
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    |||||||||||||   |||||||||| |||||||||| |||| ||| |||| ||||||||| ||| | ||||||    
T  2312959 atttattgaataaccgatgtatctggactatattatatatcagatacatcaattattcaatgaatttgaaaaat 2313032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 8987827 - 8987762
Alignment:
Q  88 aataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    |||||||||||||| |||| || ||| |||| |||||| || |||||||||||  |||||||||||    
T  8987827 aataatttatgtatttggtttaaattctagaccaaatacataagttattcaatgcatctaaaaaat 8987762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 35747330 - 35747403
Alignment:
Q  78 aaatttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaa 151  Q
    ||||||||||||||||| ||| || || |||||||||| || ||||||||| | |||||| || ||| ||||||    
T  35747330 aaatttattgaataattgatgcatttgatctatattatcgaccaaataaataaattattctatgaatataaaaa 35747403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 52532777 - 52532712
Alignment:
Q  88 aataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    ||||||| || ||| |||||| |||||||||||||||| || ||||||| ||| ||| ||||||||    
T  52532777 aataattaatatatttggtctttattatagatcaaatacattagttattgaatgaatataaaaaat 52532712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 28406569 - 28406497
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaa 156  Q
    ||||||||||||||||| | |||||| | |||||| |||||| || | ||||||||  |||||||||| ||||    
T  28406569 attgaataatttatgtacccggtctagaatatagaccaaatacattaattattcaacgaatctaaaaagtcaa 28406497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 40324756 - 40324682
Alignment:
Q  78 aaatttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    ||||||||||||||| | ||||||||||||||||||||| | || || ||||| | ||||||| ||||| |||||    
T  40324756 aaatttattgaataactgatgtatctggtctatattataaaccagattaatcaataattcaatgaatctgaaaaa 40324682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 11668117 - 11668032
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaat-tttcttataa 168  Q
    ||||| ||||| |||||||| ||||| | ||||||||||||| |||| |||| |||| |||| ||||| |||||| ||||||||||    
T  11668117 attgattaattgatgtatcttgtctagaatatagatcaaatatatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataa 11668032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 40364682 - 40364613
Alignment:
Q  84 attgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    ||||||||||| |||||| || |||||| |||| | |||||| ||||||| |||||| ||||||||||||    
T  40364682 attgaataattgatgtatttgatctataatataaaccaaatatatcagtttttcaatgaatctaaaaaat 40364613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 2610294 - 2610212
Alignment:
Q  79 aatttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    |||| |||| |||| | |||||| | ||||||||| |||| |||||| |||| ||| ||||| ||| ||||||||||||||||    
T  2610294 aattcattgcataaatgatgtatttagtctatattctagaccaaatacatcaattactcaatgaatttaaaaaatcaaatttt 2610212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 3230833 - 3230764
Alignment:
Q  82 ttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    ||||||||||||| | |||| |||||||||||||| |||| |||  | ||||||||||| |||||||||||    
T  3230833 ttattgaataattgacgtat-tggtctatattataaatcatatactttagttattcaataaatctaaaaaa 3230764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 47708588 - 47708546
Alignment:
Q  106 tctatattatagatcaaataaatcagttattcaatcaatctaa 148  Q
    ||||||||||| |||||||| |||||||||||||| |||||||    
T  47708588 tctatattataaatcaaatatatcagttattcaataaatctaa 47708546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 47718584 - 47718542
Alignment:
Q  106 tctatattatagatcaaataaatcagttattcaatcaatctaa 148  Q
    ||||||||||| |||||||| |||||||||||||| |||||||    
T  47718584 tctatattataaatcaaatacatcagttattcaatgaatctaa 47718542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 5761860 - 5761787
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaat 153  Q
    ||||||||||||||| |||||| |  |||||| ||| ||||||||| | |||||||| ||| |||||| |||||    
T  5761860 atttattgaataattgatgtattttatctataatattgatcaaatacaccagttatttaatgaatctacaaaat 5761787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 8566139 - 8566204
Alignment:
Q  96 atgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    |||||| ||||||||||| ||||  | ||| |||| ||| ||||| ||||||||||||||||||||    
T  8566139 atgtatttggtctatattctagacaagatacatcaattactcaatgaatctaaaaaatcaaatttt 8566204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 30869228 - 30869317
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatc-aaattttcttataa 168  Q
    |||||||| |||| | |||||| ||||||||||| ||||  | ||| |||| ||| ||||| |||||||||| || ||||||||||||||    
T  30869228 atttattgtataaataatgtatttggtctatattctagacaagatacatcaattactcaatgaatctaaaaagtcaaaattttcttataa 30869317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 32549875 - 32549940
Alignment:
Q  96 atgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaatcaaatttt 161  Q
    |||||| |||||||||||| |||||| ||| |||| ||||| ||| ||||||||| ||||| ||||    
T  32549875 atgtatgtggtctatattaaagatcacatacatcatttattgaatgaatctaaaatatcaattttt 32549940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 40364645 - 40364694
Alignment:
Q  103 tggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    |||| |||||||||||||||||| |||| ||||||||| || ||||||||    
T  40364645 tggtttatattatagatcaaatacatcaattattcaattaacctaaaaaa 40364694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 27095017 - 27094973
Alignment:
Q  108 tatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    |||||||||||||| |||||||| |||| |||| |||||||||||    
T  27095017 tatattatagatcagataaatcaattatccaataaatctaaaaaa 27094973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 27183286 - 27183330
Alignment:
Q  108 tatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    |||||||||||||| |||||||| |||| |||| |||||||||||    
T  27183286 tatattatagatcagataaatcaattatccaataaatctaaaaaa 27183330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 28954025 - 28954089
Alignment:
Q  88 aataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    ||||| |||||||| ||| | ||||||||  ||| ||| |||||||||||||| |||||||||||    
T  28954025 aataacttatgtatttggacaatattataattcagatacatcagttattcaataaatctaaaaaa 28954089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 47140244 - 47140316
Alignment:
Q  80 atttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    ||||||||||||||| ||| |||||  |||||||||| || ||||| |||| ||||||||  ||||| |||||    
T  47140244 atttattgaataattgatgcatctgaactatattataaattaaatacatcaattattcaacgaatctgaaaaa 47140316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 44091 - 44162
Alignment:
Q  81 tttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatctaaaaaa 152  Q
    |||| ||||||||| ||||||||| |  ||| |||||| |||| |||||||||||||||| || ||||||||    
T  44091 tttaatgaataattgatgtatctgattgatagtatagaccaaacaaatcagttattcaatgaagctaaaaaa 44162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 28197 - 28130
Alignment:
Q  78 aaatttattgaataatttatgtatctggtctatattatagatcaaataaatcagttattcaatcaatc 145  Q
    ||||||||||||||||| || ||||| ||||| | ||||||||||||| |||| |||| |||| ||||    
T  28197 aaatttattgaataattgatatatcttgtctaaaatatagatcaaatacatcatttatgcaatgaatc 28130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University