View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_low_28 (Length: 345)
Name: NF15655_low_28
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 13723793 - 13723465
Alignment:
| Q |
16 |
aaatttaattgcaagatcaactaggaatctcaggatatatgtgtgtttaacattcccataaatgcttgaatgttcatgatgttcttgaaattatttaaat |
115 |
Q |
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| T |
13723793 |
aaatttaattgcaagatcaactaggaatctcaggatatatgtgtgtttaacattcccataaatgcttgaatgttcatggttttcttgaaattatttaaat |
13723694 |
T |
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| Q |
116 |
aaaagaagaaaacaatcttcaaatccaaaagaatagaagttgtcgaaatgtgtagaaaataaataaatgtataaaaaacagagaacgaact--------- |
206 |
Q |
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| T |
13723693 |
aaaataagaaaacaatcttcaaatccaaaagaatagaagttgtcgaaatgtgtagaaaacaaataaatgtataaaaaacagagaacgaacttgaattgta |
13723594 |
T |
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| Q |
207 |
-tgaaatgattcgaaagttatatttatgcatgtgatttgtgacnnnnnnnctcatggaaacttatatttatactaagaaaagtaactatacaattctatc |
305 |
Q |
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| T |
13723593 |
ttgaattgaatccaaagttatatttatgcatttgatttgtgacttttttcctcatggaaacttatatttatactaagaaaagtaactatacaattctatc |
13723494 |
T |
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| Q |
306 |
taaattataacagccacattcttattcat |
334 |
Q |
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| T |
13723493 |
taaattataactgccatattcttattcat |
13723465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 13736563 - 13736496
Alignment:
| Q |
256 |
ctcatggaaacttatatt--tatactaagaaaagtaactatacaattctatctaaattataacagcca |
321 |
Q |
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| T |
13736563 |
ctcatggaaacttctatttatatactaaggaaaataactgtacaatcctatctaaactataactgcca |
13736496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 16911384 - 16911287
Alignment:
| Q |
68 |
ttcccataaatgcttgaatgttcatgatgttcttgaaattatttaaataaaagaagaaaacaatcttcaaatccaaa-agaatagaagttgtcgaaat |
164 |
Q |
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| T |
16911384 |
ttcccatacatacttgaatgttcatggtgtacttgagattatttgaataaaagaggaaaacaatcttcaaatccaaagagaattgaagatgtcgaaat |
16911287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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