View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_low_34 (Length: 308)
Name: NF15655_low_34
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 37851844 - 37851971
Alignment:
| Q |
1 |
accttcaactattaacctttgatataatcgggtccggttcttccacatgttgatgagtgaatacaatattacaagcact---gattaaaaattagtcatt |
97 |
Q |
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| T |
37851844 |
accttcaactattaacctttgatataatcgggtccgattcttccac-tgttgatgagtgaatacaatattacaaacacttatgattaaaaattagtcatt |
37851942 |
T |
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| Q |
98 |
tttcaagatttaaattcaatatgatcttc |
126 |
Q |
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| T |
37851943 |
tttcaagatttaaattcaatatgatcttc |
37851971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 37852011 - 37852145
Alignment:
| Q |
1 |
accttcaactattaacctttgatataatcgggtccggttcttccacatgttgatgagtgaatac------aatattacaagca---ctgattaaaaatta |
91 |
Q |
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| T |
37852011 |
accttcaactattaacctttgatataatcgggttcggttcttccacatgttgatgagtgaatacaatattaatattacaagcacttctgattaaaaatta |
37852110 |
T |
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| Q |
92 |
gtcatttttcaagatttaaattcaatatgatcttc |
126 |
Q |
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| T |
37852111 |
atcatttttcaagatttaaattcaatatgatcttc |
37852145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 37851678 - 37851804
Alignment:
| Q |
3 |
cttcaactattaacctttgatataatcgggtccggttcttccacatgttgatgagtgaatacaatattacaagca---ctgattaaaaattagtcatttt |
99 |
Q |
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| T |
37851678 |
cttcaactattaatctttgacataactgggtccggttctttcacatgttgatgggtgaatacaatattataagcacttctgattaaaaattagtcatttt |
37851777 |
T |
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| Q |
100 |
tcaagatttaaattcaatatgatcttc |
126 |
Q |
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| T |
37851778 |
ttaagatttaaattcaatatgatcttc |
37851804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 37852216 - 37852316
Alignment:
| Q |
196 |
cttgaattgtaaatgaacactccaataagctggttacaaggaatcgtagtagttacgtnnnnnnnggataatctaataataattttcactaatactgtat |
295 |
Q |
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| T |
37852216 |
cttgaattgtacttgaacactccattaagctgcctacaagtaatcgtagtagtgacgtaaaaaaaggataatattataataattttcactaatactgtat |
37852315 |
T |
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| Q |
296 |
g |
296 |
Q |
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| T |
37852316 |
g |
37852316 |
T |
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