View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15655_low_40 (Length: 277)

Name: NF15655_low_40
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15655_low_40
NF15655_low_40
[»] chr1 (4 HSPs)
chr1 (1-260)||(29423423-29423682)
chr1 (1-256)||(29453033-29453288)
chr1 (5-256)||(29443047-29443301)
chr1 (5-233)||(29467532-29467760)
[»] chr2 (23 HSPs)
chr2 (37-244)||(9321167-9321374)
chr2 (37-235)||(9328787-9328985)
chr2 (37-233)||(10336032-10336228)
chr2 (122-244)||(9283922-9284044)
chr2 (37-248)||(9274706-9274917)
chr2 (37-256)||(12012266-12012485)
chr2 (2-159)||(10347944-10348104)
chr2 (137-235)||(10353412-10353510)
chr2 (37-254)||(12005840-12006057)
chr2 (36-198)||(9065370-9065533)
chr2 (128-236)||(8579227-8579335)
chr2 (120-232)||(9316302-9316414)
chr2 (36-172)||(16269276-16269412)
chr2 (39-232)||(9060879-9061072)
chr2 (120-236)||(9292205-9292321)
chr2 (128-233)||(8573242-8573347)
chr2 (36-88)||(9316218-9316270)
chr2 (37-82)||(10353306-10353351)
chr2 (36-88)||(9292121-9292173)
chr2 (38-90)||(11987373-11987425)
chr2 (36-90)||(9284076-9284130)
chr2 (37-90)||(7115525-7115578)
chr2 (25-90)||(9364813-9364878)
[»] chr8 (1 HSPs)
chr8 (36-180)||(41966519-41966663)
[»] scaffold0667 (1 HSPs)
scaffold0667 (37-235)||(4674-4872)
[»] chr4 (1 HSPs)
chr4 (137-235)||(26575164-26575262)
[»] chr3 (1 HSPs)
chr3 (203-243)||(37462855-37462895)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 29423423 - 29423682
Alignment:
Q  1 tttcaaaactctcactattcacttcttcaccaattgcaggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggttt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29423423 tttcaaaactctcactattcacttcttcaccaatttcaggaaaaggaacctcattgaaaatctcatgtgttaggttaaacgcaacaattacacgaggttt 29423522  T
Q  101 caatggaccaagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagt 200  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29423523 caacggatcaagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagt 29423622  T
Q  201 tctttccacgagtttgttttcgagctgaagagtctcgcatgtgattcagaagtagattgt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29423623 tctttccacgagtttgttttcgagctgaagagtctcgcatgtgattcagaagtagattgt 29423682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 29453288 - 29453033
Alignment:
Q  1 tttcaaaactctcactattcacttcttcaccaattgcaggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggttt 100  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||     
T  29453288 tttcaaaactctcactattcacttcttcacctatttcaggaaaaggaacctcattgaaaatctcgtgtgttaggttaaacgcaacaattacacgagattg 29453189  T
Q  101 caatggaccaagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagt 200  Q
    |||  |||||||||||   |||||||||||||||||||||||||||||||||||||||  |||| ||| |||| |||||| ||| |||||  |||||||     
T  29453188 caactgaccaagtttccgagtcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaagg 29453089  T
Q  201 tctttccacgagtttgttttcgagctgaagagtctcgcatgtgattcagaagtaga 256  Q
    ||||||||||||||  |||||||||||||||||||| ||||||| |||||||||||    
T  29453088 tctttccacgagttcattttcgagctgaagagtctcacatgtgaatcagaagtaga 29453033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 256
Target Start/End: Complemental strand, 29443301 - 29443047
Alignment:
Q  5 aaaactctcactattcacttcttcaccaattgcaggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggtttcaat 104  Q
    ||||||||||||||| || |||||||| ||| ||||||||||||||||||||||||||||  |||||||||||||||| |||||| ||||||||| |||     
T  29443301 aaaactctcactattaacatcttcacctatttcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacgaggttgcaac 29443202  T
Q  105 ggaccaagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattg---tttgagcatagtaaagagtgtaaggcatggtaggaagtt 201  Q
     || ||||||||   ||||||| ||||||||| ||||||||||||||| |||||||||   || |||||||| |||||||||||||||| ||||||||||    
T  29443201 agatcaagtttccgagtcattacccagtgaagggaattctcaacaaaatcccccattgttcttcgagcataggaaagagtgtaaggcatagtaggaagtt 29443102  T
Q  202 ctttccacgagtttgttttcgagctgaagagtctcgcatgtgattcagaagtaga 256  Q
    |||||||||||||||||||  |||||||||||||  ||||||||||| |||||||    
T  29443101 ctttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtaga 29443047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 29467760 - 29467532
Alignment:
Q  5 aaaactctcactattcacttcttcaccaattgcaggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggtttcaat 104  Q
    ||||||||||  ||| ||||| | ||| ||| |||||| |||||||||||||||||||||| |  ||||||||||||| | ||||| || || ||  ||     
T  29467760 aaaactctcaacattaacttcataacctatttcaggaagaggaacctcattgaaaatctcaagctttaggttaaacgcgataattaaacaagattgtaac 29467661  T
Q  105 ggaccaagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctt 204  Q
      | ||||||||| | |||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||| ||| |||||  ||| |||| |||    
T  29467660 ccatcaagtttcttcttcattatccaatgaagagaattctcaacaaaaaccaccatggtttgaggatagtaaagagagtacggcatactagaaagtactt 29467561  T
Q  205 tccacgagtttgttttcgagctgaagagt 233  Q
    |||| ||||| ||||||||||||||||||    
T  29467560 tccaggagttcgttttcgagctgaagagt 29467532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 9321167 - 9321374
Alignment:
Q  37 caggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggtttcaatggaccaagtttctccgtcattatccagtgaag 136  Q
    |||||| ||||||| |||||||||| ||| ||||||||||||| |||||||||| |  ||| |  |||  |||||||||||  |||||||||||||||||    
T  9321167 caggaagaggaaccacattgaaaatttcaagtgttaggttaaatgcaacaattaaagaaggatgtaatccaccaagtttctttgtcattatccagtgaag 9321266  T
Q  137 agaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagtctc 236  Q
    ||||||||||||||||||||||||   ||||||||||  ||||| ||| |||||  | |||| |  |||||||||||||||| | ||||||||||||||     
T  9321267 agaattctcaacaaaaacccccatgaattgagcatagataagagagtacggcatactgggaattattttccacgagtttgttatagagctgaagagtctg 9321366  T
Q  237 gcatgtga 244  Q
     |||||||    
T  9321367 acatgtga 9321374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 9328787 - 9328985
Alignment:
Q  37 caggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggtttcaatggaccaagtttctccgtcattatccagtgaag 136  Q
    |||||| ||||||| |||||||||| ||| |||||||||||||||||||||||| |  ||| |  |||  |||||||||||  |||||||||||||||||    
T  9328787 caggaagaggaaccacattgaaaatttcaagtgttaggttaaacgcaacaattaaagaaggatgtaatccaccaagtttcttagtcattatccagtgaag 9328886  T
Q  137 agaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagtct 235  Q
    |||||||||||| ||||||||| |  |||||||||||  ||||| ||| ||||| | ||||| |  |||||| ||||||||||| ||| ||||||||||    
T  9328887 agaattctcaaccaaaacccccgtgttttgagcatagacaagagcgtagggcatagcaggaattattttccaagagtttgttttagagttgaagagtct 9328985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 37 - 233
Target Start/End: Original strand, 10336032 - 10336228
Alignment:
Q  37 caggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggtttcaatggaccaagtttctccgtcattatccagtgaag 136  Q
    |||||| |||||||||||||||||||||| ||| ||| ||||||||| |||||| || |||||  ||   | ||||||||   |||||||||||||||||    
T  10336032 caggaagaggaacctcattgaaaatctcaagtgatagattaaacgcagcaattaaacaaggttgtaacccatcaagtttcggagtcattatccagtgaag 10336131  T
Q  137 agaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagt 233  Q
    |||||||||||||||||| ||||| ||| ||| |||||||||| | || |||||    ||||||  |||||| ||||||||||||||||||||||||    
T  10336132 agaattctcaacaaaaacacccatggttagagtatagtaaagaatatacggcatatccggaagtgttttccaagagtttgttttcgagctgaagagt 10336228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 122 - 244
Target Start/End: Complemental strand, 9284044 - 9283922
Alignment:
Q  122 cattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttc 221  Q
    |||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||||| |||||  |||||| |  ||||||||||||||||||     
T  9284044 cattatccagtgaatagaattctcaacaaaaacccccatggcttgagcatagtaaacagtgtagggcataataggaattattttccacgagtttgttttg 9283945  T
Q  222 gagctgaagagtctcgcatgtga 244  Q
    |||||||||||||| ||||||||    
T  9283944 gagctgaagagtctggcatgtga 9283922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 248
Target Start/End: Original strand, 9274706 - 9274917
Alignment:
Q  37 caggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggtttcaatggaccaagtttctccgtcattatccagtgaag 136  Q
    |||||| ||||||| |||||||||| ||| |||||||||||||||||||||||| || ||| |   |   | ||| || |   ||||||| |||||||||    
T  9274706 caggaagaggaaccacattgaaaatatcaagtgttaggttaaacgcaacaattaaacaagggtgtgactcatcaatttccctagtcattacccagtgaag 9274805  T
Q  137 agaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagtctc 236  Q
    ||||||||||||||||| |||||| | |||| |||| | ||||| ||| |||||  | |||| |  ||||||||||||||||||| ||||||||||||||    
T  9274806 agaattctcaacaaaaatccccatggcttgaacatatttaagagcgtacggcatactgggaattattttccacgagtttgttttcaagctgaagagtctc 9274905  T
Q  237 gcatgtgattca 248  Q
     |||||||||||    
T  9274906 acatgtgattca 9274917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 256
Target Start/End: Complemental strand, 12012485 - 12012266
Alignment:
Q  37 caggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggtttcaatggaccaagtttctccgtcattatccagtgaag 136  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||| ||||||| ||| || |  ||   | || | |||| |  | ||||||| |||||    
T  12012485 caggaaatggaacctcattgaaaagctcaagtgttaggttaaacgcgacaattaaacggggatgtaacccatcaggattcttcaccgttatccaatgaag 12012386  T
Q  137 agaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagtctc 236  Q
    |||||||||||||||||| ||||| ||| |||||||| |||||   ||    ||  |||||||| ||||||||||||||||||||||| ||||||||||     
T  12012385 agaattctcaacaaaaactcccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcgaggtgaagagtctg 12012286  T
Q  237 gcatgtgattcagaagtaga 256  Q
     ||| ||| ||| |||||||    
T  12012285 acatatgaatcaaaagtaga 12012266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 159
Target Start/End: Original strand, 10347944 - 10348104
Alignment:
Q  2 ttcaaaactctcactattcacttcttcaccaattgca---ggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggt 98  Q
    |||||||||||||| ||| ||||||||||| ||| ||   |||| |||||||||||||||||| ||| |||| ||||||||||| ||||||| |  |||     
T  10347944 ttcaaaactctcaccattaacttcttcacctatttcatcaggaagaggaacctcattgaaaatttcaagtgtgaggttaaacgcgacaattaaagaagga 10348043  T
Q  99 ttcaatggaccaagtttctccgtcattatccagtgaagagaattctcaacaaaaaccccca 159  Q
    |  ||   | ||||||||| |||||| |||||||||| |||||||||||||||||||||||    
T  10348044 tgtaacccatcaagtttcttcgtcataatccagtgaatagaattctcaacaaaaaccccca 10348104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 10353412 - 10353510
Alignment:
Q  137 agaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagtct 235  Q
    ||||||||||||||||||||||||||||  ||||||||||||||  |||||||   |||||| | ||||||| |||||||||||| |||||||||||||    
T  10353412 agaattctcaacaaaaacccccattgttaaagcatagtaaagagaataaggcaaattaggaattactttccatgagtttgttttcaagctgaagagtct 10353510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 12006057 - 12005840
Alignment:
Q  37 caggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggtttcaatggaccaagtttctccgtcattatccagtgaag 136  Q
    |||||||||||||||| ||||||| |||| |||||||||||||||| | ||||| |||  | |  ||   | || ||||||    ||| |||||||||||    
T  12006057 caggaaaaggaacctcgttgaaaacctcaagtgttaggttaaacgcgaaaattaaacgctgatgtaacccatcaggtttcttgaccatcatccagtgaag 12005958  T
Q  137 agaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagtctc 236  Q
    |||||||||||||||||||||||| ||| |||||||| ||| |   ||    ||| |||||||| ||||||| ||||||||||||||  ||||||| |||    
T  12005957 agaattctcaacaaaaacccccatggttagagcatagcaaataacatactcaatgctaggaagtactttccatgagtttgttttcgaagtgaagagactc 12005858  T
Q  237 gcatgtgattcagaagta 254  Q
     ||| ||| ||| |||||    
T  12005857 acatatgaatcaaaagta 12005840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 9065533 - 9065370
Alignment:
Q  36 gcaggaaaaggaacctca-ttgaaaatctcacgtgttaggttaaacgcaacaattacacgaggtttcaatggaccaagtttctccgtcattatccagtga 134  Q
    |||||||  ||||||||| |||||||| ||| |||| |||||||| |||||||||| |  ||| |  ||  || | ||||||| |||||||||| |||||    
T  9065533 gcaggaaggggaacctcaattgaaaatttcaagtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtga 9065434  T
Q  135 agagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaa 198  Q
    | ||||||||||||||||||||||||  | | | |||||||||||| ||| ||||| |||||||    
T  9065433 atagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaa 9065370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 8579335 - 8579227
Alignment:
Q  128 ccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctg 227  Q
    |||||| |||||||||||||| ||||||||||  | |||||    |||||||| ||| || ||  |||||||| ||||||||||||||||||| ||||||    
T  8579335 ccagtggagagaattctcaacgaaaacccccacaggttgagtgctgtaaagagcgtacgggatattaggaagtgctttccacgagtttgttttggagctg 8579236  T
Q  228 aagagtctc 236  Q
    |||||||||    
T  8579235 aagagtctc 8579227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 9316302 - 9316414
Alignment:
Q  120 gtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttt 219  Q
    ||||||| ||||||||||||||||| ||||||||||||||| | |||| |||| | ||||| ||| |||||  | |||| |  |||||||||||||||||    
T  9316302 gtcattacccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtacggcatactgggaattgttttccacgagtttgttt 9316401  T
Q  220 tcgagctgaagag 232  Q
    || |||| |||||    
T  9316402 tcaagctaaagag 9316414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 16269276 - 16269412
Alignment:
Q  36 gcaggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggtttcaatggaccaagtttctccgtcattatccagtgaa 135  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||||| || |||| |  ||| |  ||     ||||||||| || |||||| ||| |||    
T  16269276 gcaggaagaggaacctcgttgaaaatctcaagtgttaggttaaacgcgacgattaaagaaggatgtaacccgtcaagtttcttcgccattatacagcgaa 16269375  T
Q  136 gagaattctcaacaaaaacccccattgtttgagcata 172  Q
     ||||||||||||||||||||||||  ||||||||||    
T  16269376 tagaattctcaacaaaaacccccatgatttgagcata 16269412  T

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Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 232
Target Start/End: Complemental strand, 9061072 - 9060879
Alignment:
Q  39 ggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggtttcaatggaccaagtttctccgtcattatccagtgaagag 138  Q
    |||| |||||||||||||||||| ||| |||| |||||||| || |||||||  | ||| |   |   | |||||||||  | ||| | |||||||||||    
T  9061072 ggaagaggaacctcattgaaaatttcaagtgtgaggttaaatgcgacaattaaccaaggatatgacccatcaagtttcttggccataacccagtgaagag 9060973  T
Q  139 aattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagag 232  Q
    |||||| ||||||||||||||| | |||| |||| | ||||| ||| |||||  | |||| |  ||||||||||||||||||| |||| |||||    
T  9060972 aattctgaacaaaaacccccatggcttgaacatattgaagagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagag 9060879  T

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Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 9292205 - 9292321
Alignment:
Q  120 gtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttt 219  Q
    ||||||| |||||| | |||||||| ||||||||||||||| | |||| |||| | ||||| ||| |||||  ||||||    |||||||||||| ||||    
T  9292205 gtcattacccagtggatagaattctgaacaaaaacccccatagcttgaacatattgaagagcgtacggcatactaggaatgattttccacgagttagttt 9292304  T
Q  220 tcgagctgaagagtctc 236  Q
    | |||||||||||||||    
T  9292305 tggagctgaagagtctc 9292321  T

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Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 8573347 - 8573242
Alignment:
Q  128 ccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctg 227  Q
    ||||||||||||||||| ||||||||||||||| | |||| |||| | ||||| ||| ||| |  | |||| |  ||||||||||||||||||| ||||     
T  8573347 ccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtatggcgtactgggaattgttttccacgagtttgttttcaagcta 8573248  T
Q  228 aagagt 233  Q
    ||||||    
T  8573247 aagagt 8573242  T

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Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 9316218 - 9316270
Alignment:
Q  36 gcaggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaat 88  Q
    ||||||| ||||||| |||||||||||||| |||||||||||||||| |||||    
T  9316218 gcaggaagaggaaccacattgaaaatctcaagtgttaggttaaacgcgacaat 9316270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 10353306 - 10353351
Alignment:
Q  37 caggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgc 82  Q
    |||||| |||||||||||||||| ||||| ||||||||||||||||    
T  10353306 caggaagaggaacctcattgaaagtctcaagtgttaggttaaacgc 10353351  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 9292121 - 9292173
Alignment:
Q  36 gcaggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaat 88  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||| || |||||    
T  9292121 gcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaat 9292173  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 11987425 - 11987373
Alignment:
Q  38 aggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaatta 90  Q
    ||||||||||||||||||||||| |||  ||||||||||||| || |||||||    
T  11987425 aggaaaaggaacctcattgaaaacctcgagtgttaggttaaatgcgacaatta 11987373  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 9284130 - 9284076
Alignment:
Q  36 gcaggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaatta 90  Q
    ||||||| ||||||||| ||||||| |||  |||||||||||||||| |||||||    
T  9284130 gcaggaagaggaacctctttgaaaacctctagtgttaggttaaacgcgacaatta 9284076  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 7115578 - 7115525
Alignment:
Q  37 caggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaatta 90  Q
    |||||| |||||||||| |||||  |||| |||||||||||||||| |||||||    
T  7115578 caggaagaggaacctcaatgaaacgctcaagtgttaggttaaacgcgacaatta 7115525  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 9364813 - 9364878
Alignment:
Q  25 cttcaccaattgcaggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaatta 90  Q
    ||||||| ||| ||||||  ||||| ||||||||||||||  |||||| |||||||||||| ||||    
T  9364813 cttcacctatttcaggaagtggaacttcattgaaaatctctagtgttaagttaaacgcaactatta 9364878  T

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Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 41966663 - 41966519
Alignment:
Q  36 gcaggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggtttcaatggaccaagtttctccgtcattatccagtgaa 135  Q
    ||||||| ||||||||  |||||||||||| |||||||||||||||| ||||||| || ||| |  |||  | |||||| ||  ||||||||||||||||    
T  41966663 gcaggaagaggaacctggttgaaaatctcaagtgttaggttaaacgcgacaattaaacaagggtgtaatccatcaagttccttggtcattatccagtgaa 41966564  T
Q  136 gagaattctcaacaaaaacccccattgtttgagcatagtaaagag 180  Q
    ||||||| | ||||||||||||||| |||||||||||||||||||    
T  41966563 gagaattgtgaacaaaaacccccatggtttgagcatagtaaagag 41966519  T

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Target: scaffold0667 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 4674 - 4872
Alignment:
Q  37 caggaaaaggaacctcattgaaaatctcacgtgttaggttaaacgcaacaattacacgaggtttcaatggaccaagtttctccgtcattatccagtgaag 136  Q
    |||||| |||||||||||||||||| ||| ||||||||||||| || ||||||| |  ||| |  ||   | |||||||||  | ||||||||||||||     
T  4674 caggaagaggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgtaacccatcaagtttctttgccattatccagtgaat 4773  T
Q  137 agaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagtct 235  Q
    ||||| |||||| ||||||||||| ||||||||| ||  ||| | ||| ||||| ||||||| |  |||||||||||| |||||| |||| ||||||||    
T  4774 agaatcctcaaccaaaacccccatggtttgagcaaagacaagggcgtacggcatagtaggaattattttccacgagttggttttcaagctaaagagtct 4872  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 26575164 - 26575262
Alignment:
Q  137 agaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagtct 235  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||| |||||| |   |||||| |  |||||| |||||||||||| |||||||||||||    
T  26575164 agaattctcaacaaaaacacccattgttcgagtatagtaaagagcgtaaggaaaattaggaattattttccatgagtttgttttcaagctgaagagtct 26575262  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 37462855 - 37462895
Alignment:
Q  203 tttccacgagtttgttttcgagctgaagagtctcgcatgtg 243  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  37462855 tttccacgagtttgttttggagctgaagagtctcacatgtg 37462895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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